View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_low_35 (Length: 378)
Name: NF15423_low_35
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 362
Target Start/End: Original strand, 480298 - 480641
Alignment:
| Q |
20 |
atactctcgttcaaatgaacaatttgttgatttagatggatctacacgaatcatcttagctaaagaagacgctggttgtctcggttagggaagagacatt |
119 |
Q |
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| T |
480298 |
atactctcgttcaaatgaacaatttgttgatttagaaggatctacacgaatcatcttagctaaagaagacgctggttgtctcggtcagggaagagacatt |
480397 |
T |
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| Q |
120 |
gattcacttcctagtagaatcacaacatttaacacggggggcacgtgttactagtcttcttgcacacacaagaactaatacgaagagaatatctttttcc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
480398 |
gattcacttcctagtagaatcacaacatttaacacggggggcacgtgttactagtcttcttgcacacacaagagctaatacgaagagaatttctttttcc |
480497 |
T |
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| Q |
220 |
tcccttcgcctttctcatgcgtcctccgttattacaattttactcccatttatattatataataatccgaagg-nnnnnnnnnnttaagattatataatc |
318 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| || | ||||||||||| |
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| T |
480498 |
tcccttcgcctttctcttgcgtcctccgttattacaattttactcccattcatattatataataatttgaaggaaaaaaaaaagtttatattatataatc |
480597 |
T |
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| Q |
319 |
cgaaacatacctatatataagcaatactcataaacttccttcat |
362 |
Q |
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| T |
480598 |
cgaaacatacctatatataagcaatactcataaacttccttcat |
480641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 149
Target Start/End: Original strand, 482363 - 482479
Alignment:
| Q |
33 |
aatgaacaatttgttgatttagatggatctacacgaatcatcttagctaaagaagacgctggttgtctcggttagggaagagacattgattcacttccta |
132 |
Q |
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|||||||||||||||||| |||||||||||| |||||||||||| | |||| | |||||||||||||||| |||||| ||||||||||||||| | |
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| T |
482363 |
aatgaacaatttgttgatgcagatggatctacgcgaatcatcttacccgaagagaatgctggttgtctcggttgaggaagaaccattgattcacttccca |
482462 |
T |
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| Q |
133 |
gtagaatcacaacattt |
149 |
Q |
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| T |
482463 |
atagaaccacaacattt |
482479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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