View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_low_38 (Length: 361)
Name: NF15423_low_38
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 56393317 - 56392990
Alignment:
| Q |
18 |
agtgagcctactcagggctctgttttctctgtgaagaagtatcccaacaaagaagttcgtaagtgtacccactgtaatggtgataatcatgtagtcgaag |
117 |
Q |
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| T |
56393317 |
agtgagcctactcaggggtctgttttctctgtgaagaagtatcccaagaaaggagttcgtaagtgtacccactgtaatggtgataatcatgtagtggaag |
56393218 |
T |
|
| Q |
118 |
catgttttaaactccatggatatccagattggcatccaaaaggaaaaaataattctagcaataaggaagaaaataattatacggctgcaggatttgtaac |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||| ||||| |
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| T |
56393217 |
catgttttaaactccatggatatccagattggcatccaaaaggaaaaaataattccagcaataaggcagaaaataattctacggctgcaggattcgtaac |
56393118 |
T |
|
| Q |
218 |
caagtcaggtatatctaactctcctcttaatctttttgttgttactaggagtagagattggataatcgatacaggggctactgaccatatgacttgtgag |
317 |
Q |
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|||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56393117 |
caagtcaggtatatctaactctgctcttaatctttctgttgttactaggggtagagattggataatcgatacaggggctactgaccatatgacttgtgaa |
56393018 |
T |
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| Q |
318 |
cgtcatgtatttactaattttttctctg |
345 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
56393017 |
cgtcatgtatttactaattttttctctg |
56392990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 27517555 - 27517228
Alignment:
| Q |
18 |
agtgagcctactcagggctctgttttctctgtgaagaagtatcccaacaaagaagttcgtaagtgtacccactgtaatggtgataatcatgtagtcgaag |
117 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
27517555 |
agtgagcctactcaggggtctgttttctctgtgaagaagtatcccaagaaaggagttcgttagtgtacccactgtaatggtgataatcatgtagttgaag |
27517456 |
T |
|
| Q |
118 |
catgttttaaactccatggatatccagattggcatccaaaaggaaaaaataattctagcaataaggaagaaaataattatacggctgcaggatttgtaac |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||| ||||||||||||||| ||||| |
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| T |
27517455 |
catgttttaaactccatggatatccagattggcatccaaaaggaaaaaataattccatcaataaggcagaaaataattctacggctgcaggattcgtaac |
27517356 |
T |
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| Q |
218 |
caagtcaggtatatctaactctcctcttaatctttttgttgttactaggagtagagattggataatcgatacaggggctactgaccatatgacttgtgag |
317 |
Q |
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|||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27517355 |
caagtcaggtatatctaactctgctcttaatctttctgttgttactaggggtagagattggataatcgatacaggggctactgaccatatgacttgtgaa |
27517256 |
T |
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| Q |
318 |
cgtcatgtatttactaattttttctctg |
345 |
Q |
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|||||||||||||||||||||| ||||| |
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| T |
27517255 |
cgtcatgtatttactaatttttcctctg |
27517228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 46 - 339
Target Start/End: Complemental strand, 40457244 - 40456939
Alignment:
| Q |
46 |
ctgtgaagaagtatcccaacaaagaagttcgtaagtgtacccactgtaatggtgataatcatgtagtcgaagcatgttttaaactccatggatatccaga |
145 |
Q |
| |
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|||| ||||||||||| || |||| | |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||| |
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| T |
40457244 |
ctgtcaagaagtatcctaagaaaggaattcgcaagtgtacccactgtaatggtgataatcatgtcaaggaaacatgttttaaactccatggttatccaga |
40457145 |
T |
|
| Q |
146 |
ttggcatccaaaaggaaaaaataattctagcaataaggaagaaaata------------attatacggctgcaggatttgtaaccaagtcaggtatatct |
233 |
Q |
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|||||| |||||||| ||| || ||| | || ||||||||||||| || ||| ||||| || |||| ||| ||||||||||||||| |
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| T |
40457144 |
ttggcacccaaaaggcaaatctacttccaataacaaggaagaaaatattaagggccatgtttctactgctgctggttttgcaacaaagtcaggtatatct |
40457045 |
T |
|
| Q |
234 |
aactctcctcttaatctttttgttgttactaggagtagagattggataatcgatacaggggctactgaccatatgacttgtgagcgtcatgtatttacta |
333 |
Q |
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|||||| || ||||||||| ||||||||||| | ||| ||||||||||| |||||||| ||| |||| |||||||||||||| | || ||||||||| |
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| T |
40457044 |
aactctgctattaatctttctgttgttactaaggatagtgattggataattgatacaggtgcttctgatcatatgacttgtgatccacacatatttacta |
40456945 |
T |
|
| Q |
334 |
attttt |
339 |
Q |
| |
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|||||| |
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|
| T |
40456944 |
attttt |
40456939 |
T |
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