View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_low_41 (Length: 358)
Name: NF15423_low_41
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 25540257 - 25539910
Alignment:
| Q |
1 |
tataagcactctttttgtatgaagggcctatttggattgactagttttgggcgtatgtgggctcttttggtatatgcactttatagggctgtttgggtga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540257 |
tataagcactctttttgtatgaagggcctatttggattgactagttttgggcgtatgtgggctcttttggtatatgcactttatagggctgtttgggtga |
25540158 |
T |
|
| Q |
101 |
gagtatcacaagagcttatgagctcccataagttgtttgtcataagctctcctaacaagcttatgaatttgggcttatgcagttcctcggcttatgaccc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540157 |
gagtatcacaagagcttatgagctcccataagttgtttgtcataagctctcttaacaagcttatgaatttgggcttatgcagttcctcggcttatgaccc |
25540058 |
T |
|
| Q |
201 |
taaccgcaaacctctttgtcatatcgctagtgctgttcctctcgtcgtacccctctttgctcttcaactcatttattcaccaacattccttggattttag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||| |
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| T |
25540057 |
taaccgcaaacctctttgtcatatcgctagtgctgttcctctcgtcgtacccctctttgctcttcaactcatgtattcatcaacattccttgtattttag |
25539958 |
T |
|
| Q |
301 |
ttcgatgtgcttgctttctttgtcatgatttttgcatgttccattcat |
348 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25539957 |
gtcgatttgcttgctttctttgtcatgatttttgcatgttccattcat |
25539910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 25517336 - 25517494
Alignment:
| Q |
1 |
tataagcactctttttgtatgaagggcctatttggattgactagttttgggcgtatgtgggctcttttggtatatgcactttatagggctgtttgggtga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||| |
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| T |
25517336 |
tataagcactctttttgtatgaagggcctatttggattgactagttttgggcgtatg------------gtatatgcactttatagaggtgtttgggtga |
25517423 |
T |
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| Q |
101 |
gagtatcacaagagcttatgagctcccataagttgtttgtcataagctctcctaacaagcttatgaatttg |
171 |
Q |
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| T |
25517424 |
gagtatcacaagagcttatgagctcccataagttgtttgtcataagctctcctaacaagcttatgaatttg |
25517494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 218 - 348
Target Start/End: Original strand, 25517537 - 25517667
Alignment:
| Q |
218 |
gtcatatcgctagtgctgttcctctcgtcgtacccctctttgctcttcaactcatttattcaccaacattccttggattttagttcgatgtgcttgcttt |
317 |
Q |
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|||||||| ||||||||||||||||| || ||||||||||||||| ||||||||| |||||| |||| ||||||| ||||| | ||||| ||| |||||| |
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| T |
25517537 |
gtcatatccctagtgctgttcctctcttcatacccctctttgctcctcaactcatgtattcatcaacgttccttgtattttgggtcgatttgcctgcttt |
25517636 |
T |
|
| Q |
318 |
ctttgtcatgatttttgcatgttccattcat |
348 |
Q |
| |
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| |||||||||||||||||||||||||||| |
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| T |
25517637 |
ttatgtcatgatttttgcatgttccattcat |
25517667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 25524680 - 25524598
Alignment:
| Q |
4 |
aagcactctttttgtatgaagggcctatttggattgactagttttgggcgtatgtgggctcttttggtatatgcactttatag |
86 |
Q |
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||||||||| |||||||||| ||||| |||||||| |||| ||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
25524680 |
aagcactctgtttgtatgaaaggcctctttggatttactaattttgggagtatctgggctcttttggtatatgcactttatag |
25524598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 178
Target Start/End: Original strand, 27122674 - 27122733
Alignment:
| Q |
119 |
tgagctcccataagttgtttgtcataagctctcctaacaagcttatgaatttgggcttat |
178 |
Q |
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|||||||||||||| ||||| |||||||||| |||||||||||||| || |||||||||| |
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| T |
27122674 |
tgagctcccataagctgtttttcataagctcccctaacaagcttataaacttgggcttat |
27122733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 24023997 - 24024055
Alignment:
| Q |
110 |
aagagcttatgagctcccataagttgtttgtcataagctctcctaacaagcttatgaat |
168 |
Q |
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||||||||||||||||||||||| ||||| | ||||||||||| |||||||||||| |
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| T |
24023997 |
aagagcttatgagctcccataagctgttttcaacgagctctcctaataagcttatgaat |
24024055 |
T |
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