View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_low_42 (Length: 342)
Name: NF15423_low_42
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_low_42 |
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| [»] scaffold0194 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 139 - 320
Target Start/End: Original strand, 25027270 - 25027450
Alignment:
| Q |
139 |
tattcattatgaaaattcattatctaggaagacccaatataatctaagttacttagcattatagaacggcattatgaaaaataactactgcaatcaccaa |
238 |
Q |
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| T |
25027270 |
tattcattatgaaaattcattatctaggaagacccaatataacctaagttacttattattatagaacggcattatgaaaaataactactgcaaccaccaa |
25027369 |
T |
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| Q |
239 |
ttgatttctggactctgaatcttttgggagatggtggacgtatttctgtgtataaagaatttttcctaatgggagagagata |
320 |
Q |
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| T |
25027370 |
ttga-ttctggactctgaatcttttgggagatggtggacgtatttctgtgtataaagaatttttcctgatgggagagagata |
25027450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 25027240 - 25027276
Alignment:
| Q |
47 |
gggtgatggatggacatccaataatagacatattcat |
83 |
Q |
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| T |
25027240 |
gggtaatggatggacatccaataatagatatattcat |
25027276 |
T |
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Target: scaffold0194 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0194
Description:
Target: scaffold0194; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 320
Target Start/End: Complemental strand, 15845 - 15767
Alignment:
| Q |
243 |
tttctggactctgaatcttttgggagatggtggacgtatttctgtgtataaa-gaatttttcctaatgggagagagata |
320 |
Q |
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| T |
15845 |
tttctcgactctgaatcttttgggagaaggtggatttggctctgtgtataaaggaattttacctgatgggagagagata |
15767 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 145501 - 145546
Alignment:
| Q |
39 |
atgtggaagggtgatggatggacatccaataatagacatattcata |
84 |
Q |
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| T |
145501 |
atgtggaagggtaatggatggacatccactaatagatatattcata |
145546 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 25397961 - 25397916
Alignment:
| Q |
39 |
atgtggaagggtgatggatggacatccaataatagacatattcata |
84 |
Q |
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| T |
25397961 |
atgtggaaggataatggatggacatccactaatagatatattcata |
25397916 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 22746545 - 22746500
Alignment:
| Q |
39 |
atgtggaagggtgatggatggacatccaataatagacatattcata |
84 |
Q |
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|||||||||||| ||||||||||||||| | ||||| ||||||||| |
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| T |
22746545 |
atgtggaagggtaatggatggacatccactgatagatatattcata |
22746500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 22748932 - 22748887
Alignment:
| Q |
39 |
atgtggaagggtgatggatggacatccaataatagacatattcata |
84 |
Q |
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| T |
22748932 |
atgtgaaagggtaatggatggacatccactaatagatatattcata |
22748887 |
T |
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