View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_low_44 (Length: 341)
Name: NF15423_low_44
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 46834396 - 46834111
Alignment:
| Q |
18 |
aatgacatcatactcggttattcccaaacaaccataggaacaggagcag------tactgataagagtggaaacatattgcctggtaagtggaacattac |
111 |
Q |
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| T |
46834396 |
aatgacatcatactcggttattcccaaacaaccataggaacaggagcaggagcagtactgataagagtggaaatatattgcctggtaagtggaacattac |
46834297 |
T |
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| Q |
112 |
taaattgcatacatacataaattatttcataatgtgtttgttcttaaagttattgtcgaataagattgaaatattttcttaatttttatatgtctttcag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46834296 |
taaattgcatacatacataaattatttcataatgtgtttgttcttaaagttattgtcgaataagattgaaatattttcttaatttttatatgtctttcag |
46834197 |
T |
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| Q |
212 |
gtactgttgtcgatactaaaatttgccatccgacataatttgacttttatctctgcagtcatgctggcaaccaagtagatagtatt |
297 |
Q |
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| T |
46834196 |
gtactgttgtcgatactaaaatttgccatccgacagaatttgacttttatctctgcagtcatgctggcaaccaagtagatattatt |
46834111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 341
Target Start/End: Complemental strand, 46833491 - 46833448
Alignment:
| Q |
298 |
attttgatttaatgtttaatttacaacgtttctcaagataaccc |
341 |
Q |
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| T |
46833491 |
attttgatttgatgtttaatgcacaacgtttctcaagataaccc |
46833448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 21 - 340
Target Start/End: Original strand, 46377246 - 46377557
Alignment:
| Q |
21 |
gacatcatactcggttattcccaaacaaccataggaacaggagcagtactgataagagtggaaacatattgcctggtaagtggaacattactaaattgca |
120 |
Q |
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| T |
46377246 |
gacatcatactcggttattcccaaacaaccatagggacaggagcagtaccgataagagcgggaatattttgcctggtaagttgaacatgactaaattgca |
46377345 |
T |
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| Q |
121 |
tacatacataaattatttcataatgtgtttgttcttaaagttattgtcgaataagattgaaatattttcttaatttttatatgtctttcaggtactgttg |
220 |
Q |
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|||||| || ||||||| ||| | |||||| | ||| |||||||| ||||||||||||||||||| ||||| | | ||||||||||| || |||| |
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| T |
46377346 |
tacata----aactatttcagaatctttttgttttgaaaattattgtcaaataagattgaaatattttgttaatat--aagtgtctttcagggaccgttg |
46377439 |
T |
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| Q |
221 |
tcgatactaaaatttgccatccgacataatttgacttttatctctgcagtcatgctggcaaccaagtagatagtattattttgatttaatgtttaattta |
320 |
Q |
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| T |
46377440 |
tcgatactaaaatttgccatccgacagaatttgatttttatctctgcagtcatgctggcatccaggtaga---tactattctgattttatgtttaatgca |
46377536 |
T |
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| Q |
321 |
c-aacgtttctcaagataacc |
340 |
Q |
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| T |
46377537 |
caaacgtttctcaagataacc |
46377557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 280
Target Start/End: Original strand, 15412340 - 15412415
Alignment:
| Q |
205 |
ctttcaggtactgttgtcgatactaaaatttgccatccgacataatttgacttttatctctgcagtcatgctggca |
280 |
Q |
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| T |
15412340 |
ctttcaggaactgttgttgataccaaaatttgtcatccaacagagtttgatttttatctctgcagtcacgctggca |
15412415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 15412183 - 15412260
Alignment:
| Q |
21 |
gacatcatactcggttattcccaaacaaccataggaacaggagcagtactgataagagtggaaacatattgcctggta |
98 |
Q |
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|||| ||||||||||||||| |||||||||| ||| |||| | |||||||||| ||||||||| ||| ||||||||| |
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| T |
15412183 |
gacaccatactcggttattcgcaaacaaccacagggacagaaacagtactgatcggagtggaaatatactgcctggta |
15412260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 28767489 - 28767561
Alignment:
| Q |
206 |
tttcaggtactgttgtcgatactaaaatttgccatccgacataatttgacttttatctctgcagtcatgctgg |
278 |
Q |
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|||||||||||||||| ||| |||| || |||||||| ||| |||||||||||||||| ||||| |||||||| |
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| T |
28767489 |
tttcaggtactgttgtggattctaagatctgccatcccacagaatttgacttttatctttgcagccatgctgg |
28767561 |
T |
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