View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_low_48 (Length: 308)
Name: NF15423_low_48
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_low_48 |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 291
Target Start/End: Original strand, 3555879 - 3556152
Alignment:
| Q |
19 |
tgaggatgtaaagaaattatacatcgaagagtttacttttgcttgacttgagtaacatcctccttaaataacttcttgtcataagttgtcaccaccaaag |
118 |
Q |
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| T |
3555879 |
tgaggatgtaaagaa-ttatacatcgaagagtttacttttgcttgacttgagtaacatcctccttaaataacttcttgtcataagttgtcaccaccaaag |
3555977 |
T |
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| Q |
119 |
tcatcttgattttcatccaaatttcactctattttcatttggaggcaaaagctttggaaacatacagcttcttggaaggcatatagtggtcttgaacaaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3555978 |
tcatcttgattttcatccaaatttcactctattttcatttggaggcaaaagctttggaaacatacagcttcttggaaggcatatagtggtcttgagcaaa |
3556077 |
T |
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| Q |
219 |
gaaatttttacacacactgtgagttatagc--atatcttaaaacttctttaagagcttttaacttctactctctc |
291 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3556078 |
gaaaattttacacacactgtgagttatagcatatatcttaaaacttctttaagagcttttaacttctactctctc |
3556152 |
T |
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