View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_low_56 (Length: 262)
Name: NF15423_low_56
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 20 - 249
Target Start/End: Original strand, 3270888 - 3271125
Alignment:
| Q |
20 |
gtccacgggtcccgcataagctgaatgaaaatgatgcttctgtctctagtttaaaatcatagttctatgtttcaacatttatctaaattaagtacttact |
119 |
Q |
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| T |
3270888 |
gtccacgggtcccgcataagctgaatgaaaatgatgcttctgtctctagtttaaaatcatagttctatgtttcaaca-ttatctaaattaagtacttact |
3270986 |
T |
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| Q |
120 |
acattgtaaaaggaagaaac---------tactgcatcattttcattcatggtttggttgatacctctttggattgggtctggatcagcttcttgaacac |
210 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
3270987 |
acattgtaaaaggaagaaactaatctaattactgcatcattttcattcatggtttggttgatacctctttgggttgggtctggatcagcttcctgaacac |
3271086 |
T |
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| Q |
211 |
cttccctcccacgcaacacattagagtactgacctatgc |
249 |
Q |
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| T |
3271087 |
cttccctcccacgcaacacattagagcactaacctatgc |
3271125 |
T |
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