View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_low_6 (Length: 785)
Name: NF15423_low_6
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 492; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 162 - 775
Target Start/End: Original strand, 12268283 - 12268889
Alignment:
| Q |
162 |
aaaccaatttttcatttaagnnnnnnnaaaatttctttgataaacaaattatagcaaaaagatgatgcactataaaaatcttctttttnnnnnnnttata |
261 |
Q |
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| T |
12268283 |
aaaccaatttttcatttaagtttttttaaaatttctttgataaacaaattatagcaaaaagatgacacactataaaaaatttctttttaaaaaaattata |
12268382 |
T |
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| Q |
262 |
acaatcgagctcaaaatcaacagcactccatttttgcttctgggtttcgatcacaattgagtgaggagaagaaggtggaagtgagagaaatttaaagagt |
361 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12268383 |
acaatcgagctcaaaattaatagcactccatttttgcttctggggttcgatcacaatcgagtgagaagaagaaggtggaagtgagagaaatttaaagagt |
12268482 |
T |
|
| Q |
362 |
tagaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaacttacaaagtatgaaacacattttggaaatgttac |
461 |
Q |
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| T |
12268483 |
tagaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaacgtacaaagtatgaaacacattttggaaatgttac |
12268582 |
T |
|
| Q |
462 |
aaaatcaccatagcagtaacaatttaacaaatgttacaaggtgagtgagtgagtgttactaaaagtcacaaatgcagtagtggctacccatccccccata |
561 |
Q |
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| T |
12268583 |
aaaatcaccatatcagtaacaatttaacaaatgttacaaggtgagtgagtgagtgttactaaaagtcacaaatgcagtagtggcta--------cccata |
12268674 |
T |
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| Q |
562 |
tcaatattttcatttattactaataaattataaattattttatagaatcgtttgctat-aaaaaataaaggtctaatgcaaatatctttttgggtgagtc |
660 |
Q |
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| T |
12268675 |
tcaatattttcatttattactaataaattataaattattttatagaatcgtttgctataaaaaaataaaggtctaatgcaaatatctttttgggtgagtc |
12268774 |
T |
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| Q |
661 |
atctgcaaaatctaaaacatcacaaactggagaattttagtccagattcagaaaagataaatagctagaagagttatggtagttagtcaagtaaaacaat |
760 |
Q |
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| T |
12268775 |
atctgcaaaatctaaaacatcacaaactggagaattttagtccagattcagaaaagataaatagctagaagagttatggtagttagtcaagtaaaacaat |
12268874 |
T |
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| Q |
761 |
gcgttgtgatgatgt |
775 |
Q |
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| T |
12268875 |
gcgttgtgatgatgt |
12268889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 506 - 619
Target Start/End: Original strand, 12270163 - 12270276
Alignment:
| Q |
506 |
gtgagtgagtgttactaaaagtcacaaatgcagtagtggctacccatccccccatatcaatattttcatttattactaataaattataaattattttata |
605 |
Q |
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| T |
12270163 |
gtgagtaagtgttacaaaaagtcataaatgtagtagtggctaccaatcaccccatataaatattttcatttatttgcaataaattataaattactttaaa |
12270262 |
T |
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| Q |
606 |
gaatcgtttgctat |
619 |
Q |
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| T |
12270263 |
gaatcgttggctat |
12270276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 346 - 426
Target Start/End: Original strand, 17032022 - 17032100
Alignment:
| Q |
346 |
gagaaatttaaagagttagaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaa |
426 |
Q |
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| T |
17032022 |
gagaaatttaaa-agttagaaaattgaaatgtattttaaaaggcaaattataaa-cactaataactaaaagagagttacaa |
17032100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 346 - 426
Target Start/End: Original strand, 17562458 - 17562536
Alignment:
| Q |
346 |
gagaaatttaaagagttagaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaa |
426 |
Q |
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| T |
17562458 |
gagaaatttaaa-agttagaaaattgaaatgtattttaaaaggcaaattataaa-cactaataactaaaagagagttacaa |
17562536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 17030627 - 17030575
Alignment:
| Q |
364 |
gaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaaga |
417 |
Q |
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| T |
17030627 |
gaaaactgaaatgtattttaaaaggaaaattataaa-cactaataactaaaaga |
17030575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 17561063 - 17561011
Alignment:
| Q |
364 |
gaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaaga |
417 |
Q |
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| T |
17561063 |
gaaaactgaaatgtattttaaaaggaaaattataaa-cactaataactaaaaga |
17561011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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