View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_low_62 (Length: 251)
Name: NF15423_low_62
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_low_62 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 44872439 - 44872662
Alignment:
| Q |
1 |
cctccaacccaaataaaaaagatgttgttttgctttcaaagccaaatcctttcttctaaagctttctttacgatcttttaatcctgttaagcgataccat |
100 |
Q |
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| T |
44872439 |
cctccaacccaaataaaaaagatgttgttttgctttcaaagccaaatcctttcttctaaagctttctttacgatcttttaatcctgttaagcgataccat |
44872538 |
T |
|
| Q |
101 |
tcaaacacagcttgtggacaatactcaggttctatgttgatatgaggaggtggtgaacgagaatccatatcaaaaactccaaactgtataccaatctgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44872539 |
tcaaacacagcttgtggacaatactcaggttctatgttgatatgaggaggtggtgaacgagaatccatatcaaaaactccaaactgtataccaatctgca |
44872638 |
T |
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| Q |
201 |
caaaaacactatttcaatgttatt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
44872639 |
caaaaacactatttcaatgttatt |
44872662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 3 - 214
Target Start/End: Complemental strand, 47527222 - 47527011
Alignment:
| Q |
3 |
tccaacccaaataaaaaagatgttgttttgctttcaaagccaaatcctttcttctaaagctttctttacgatcttttaatcctgttaagcgataccattc |
102 |
Q |
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||||||||||| ||| ||||||||||||||||||||||| |||||||||||| | | ||||||||| |||| | || |||||||||||| |||||||| |
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| T |
47527222 |
tccaacccaaagaaagaagatgttgttttgctttcaaagtcaaatcctttctaccagcactttctttaggatcatgtagtcctgttaagcggtaccattc |
47527123 |
T |
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| Q |
103 |
aaacacagcttgtggacaatactcaggttctatgttgatatgaggaggtggtgaacgagaatccatatcaaaaactccaaactgtataccaatctgcaca |
202 |
Q |
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| T |
47527122 |
tcttacagcttctggacaatgctcaggtactatgttgatatcaggaggtagtgaacgagaatccatatcaaaaacttcaattcatataccaatctgcaca |
47527023 |
T |
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| Q |
203 |
aaaacactattt |
214 |
Q |
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||||||| |||| |
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| T |
47527022 |
aaaacacaattt |
47527011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 3 - 201
Target Start/End: Complemental strand, 47521973 - 47521775
Alignment:
| Q |
3 |
tccaacccaaataaaaaagatgttgttttgctttcaaagccaaatcctttcttctaaagctttctttacgatcttttaatcctgttaagcgataccattc |
102 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||| |||||| | | |||||||||||||||| || |||||||||||| |||||||| |
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| T |
47521973 |
tccaacccaaagaaagaagatgttgttttgctttcaaagccaaattctttctaccagcactttctttacgatcttgtagtcctgttaagcggtaccattc |
47521874 |
T |
|
| Q |
103 |
aaacacagcttgtggacaatactcaggttctatgttgatatgaggaggtggtgaacgagaatccatatcaaaaactccaaactgtataccaatctgcac |
201 |
Q |
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||||||| |||||||| |||||||| ||||||||||| ||||||| |||||||||| |||||||||||| |||||| ||||| ||||||||| |
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| T |
47521873 |
tcttacagcttctggacaatgctcaggttttatgttgatatcaggaggtactgaacgagaagccatatcaaaaaatccaaatcatatacaaatctgcac |
47521775 |
T |
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