View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15423_low_63 (Length: 249)
Name: NF15423_low_63
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_low_63 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 37601790 - 37602015
Alignment:
| Q |
16 |
aactccatataaatgaattttgcattgtgctccttttatgatgtttaaatttaatttaattccatttggttttgtagattgatgagcacgtgcaaaggga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37601790 |
aactccatataaatgaattttgcattgtgctccttttatgatgtttaaatttaatttaattccatttggttttgtagattgatgagcacgtgcaaaggga |
37601889 |
T |
|
| Q |
116 |
gattataaatcataggtcattgaagcatcccaatattgttagatttaaagaggtacttagaggttttaatagtgtcattattatgcatcctatttcttat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37601890 |
gattataaatcataggtcattgaagcatcccaatattgttagatttaaagaggtacttagaggttttaatagtgtcattattatgcatcctatttcttat |
37601989 |
T |
|
| Q |
216 |
aagaatttatctggtgttattttctt |
241 |
Q |
| |
|
||||||||| |||||||||||||||| |
|
|
| T |
37601990 |
aagaatttacctggtgttattttctt |
37602015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 91 - 170
Target Start/End: Original strand, 39410650 - 39410729
Alignment:
| Q |
91 |
agattgatgagcacgtgcaaagggagattataaatcataggtcattgaagcatcccaatattgttagatttaaagaggta |
170 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39410650 |
agattgatgagcatgttcaaagggagattataaatcataggtccttgaagcatcccaatatcattagatttaaagaggta |
39410729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 169
Target Start/End: Complemental strand, 27107793 - 27107715
Alignment:
| Q |
91 |
agattgatgagcacgtgcaaagggagattataaatcataggtcattgaagcatcccaatattgttagatttaaagaggt |
169 |
Q |
| |
|
|||||||||| | || |||||||| || || || ||||| |||||||||||||| ||||||||||| || |||||||| |
|
|
| T |
27107793 |
agattgatgataatgtccaaagggaaatcatgaaccatagatcattgaagcatcctaatattgttaggttcaaagaggt |
27107715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 12309285 - 12309331
Alignment:
| Q |
108 |
caaagggagattataaatcataggtcattgaagcatcccaatattgt |
154 |
Q |
| |
|
|||||||| |||||||||||||| ||| ||| ||||||||||||||| |
|
|
| T |
12309285 |
caaagggaaattataaatcatagatcactgaggcatcccaatattgt |
12309331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University