View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_low_70 (Length: 236)
Name: NF15423_low_70
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_low_70 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 31175968 - 31176187
Alignment:
| Q |
1 |
tattttatcgattaatttaacgagatatcaaaaattaaaagataaaatagttctctcattatctctctgaagatacatggtcaataatacataaagatat |
100 |
Q |
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| T |
31175968 |
tattttatcggttaatttaacaagatatcaaaagttaaaagataaaatagttctctcattatctctctggagatatatggtcaatgatacataaagatat |
31176067 |
T |
|
| Q |
101 |
acttaaaacaaaatatcttcataagtatacaccctattacctaatctagcaattttatcaaaccaaat---aaaacataagtacctattaccgagataaa |
197 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
31176068 |
acttaaaacaaaatagcttcgtaagtatacaccctattacctaatctagcaattttatcaaaccaaataaaaaaacataagtacctattacccagataaa |
31176167 |
T |
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| Q |
198 |
aataaaaagtaacacccaaa |
217 |
Q |
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|||||||||||||||||||| |
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| T |
31176168 |
aataaaaagtaacacccaaa |
31176187 |
T |
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