View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_low_78 (Length: 220)
Name: NF15423_low_78
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_low_78 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 23077554 - 23077366
Alignment:
| Q |
14 |
aaaggtgatagagtttttatgataagctttggtgctggatttaaatgcaatagttgcttatgggaagtgatgaaagatgttggagatgcaaatgtatggg |
113 |
Q |
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| T |
23077554 |
aaaggtgatagagtttttatgataagctttggtgctggatttaaatgcaatagttgcttatgggaagtgatgaaagatgttggagatgcaaatgtatggg |
23077455 |
T |
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| Q |
114 |
aagattgtattgatgattatccaccagagtctttgatcaatcctttcatggagaagtatggttggctcaatgaagttgaggatgcaacc |
202 |
Q |
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| T |
23077454 |
aagattgtattgatgattatccaccagagtctttgatcaatcctttcatggagaagtatggttggctcaatgaagttgaggatgaaacc |
23077366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 14 - 196
Target Start/End: Complemental strand, 23072949 - 23072767
Alignment:
| Q |
14 |
aaaggtgatagagtttttatgataagctttggtgctggatttaaatgcaatagttgcttatgggaagtgatgaaagatgttggagatgcaaatgtatggg |
113 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23072949 |
aaaggtgatagagtatttatgataagctttggtgctggatttaaatgcaatagttgcttatgggaagtgatgaaagatgttggagatgcaaatgtttggg |
23072850 |
T |
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| Q |
114 |
aagattgtattgatgattatccaccagagtctttgatcaatcctttcatggagaagtatggttggctcaatgaagttgaggat |
196 |
Q |
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| T |
23072849 |
aagattgtattgataattatccaccaaagtctttggtcaatcctttcatggagaagtatagttgggtcaatgaagttgaggat |
23072767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 14 - 196
Target Start/End: Original strand, 23111388 - 23111570
Alignment:
| Q |
14 |
aaaggtgatagagtttttatgataagctttggtgctggatttaaatgcaatagttgcttatgggaagtgatgaaagatgttggagatgcaaatgtatggg |
113 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23111388 |
aaaggtgatagagtatttatgataagctttggtgctggatttaaatgcaatagttgcttatgggaagtgatgaaagatgttggagatgcaaatgtttggg |
23111487 |
T |
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| Q |
114 |
aagattgtattgatgattatccaccagagtctttgatcaatcctttcatggagaagtatggttggctcaatgaagttgaggat |
196 |
Q |
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|||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23111488 |
aagattgtattgataattatccacctaagtctttggtcaatcctttcatggagaagtatggttgggtcaatgaagttgaggat |
23111570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 41080046 - 41079965
Alignment:
| Q |
14 |
aaaggtgatagagtttttatgataagctttggtgctggatttaaatgcaatagttgcttatgggaagtgatgaaagatgttg |
95 |
Q |
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|||||||| ||||| || |||||||| || |||||||| ||||||||||| ||||| | |||||||| |||| |||||||| |
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| T |
41080046 |
aaaggtgagagagtattgatgataagtttaggtgctggctttaaatgcaacagttgttattgggaagtaatgagagatgttg |
41079965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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