View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15423_low_79 (Length: 218)
Name: NF15423_low_79
Description: NF15423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15423_low_79 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 3e-90; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 13731357 - 13731173
Alignment:
| Q |
18 |
aactttgcgagttatttctgcacaaccaaggattccaaatcttattggttttgtttcttcattatccatattctttctggaagagagagtgtaagatgaa |
117 |
Q |
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| T |
13731357 |
aactttgcgagttatttctgcacaaccaaggattccaaatcttattggttttgtttcttcattatccatattctttctggaagagagagtgtaagatgaa |
13731258 |
T |
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| Q |
118 |
tttgaatgttgcaattggttataccaagagtacttggttggctatataaagatgaaatttggacgactcaatcttaacacttcattt |
204 |
Q |
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| T |
13731257 |
tttgaatgttgc--ttggttataccaagggtacttgggtggctatataaagatgaaatttggacgactcaatcttaacacttcattt |
13731173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 13741703 - 13741580
Alignment:
| Q |
30 |
tatttctgcacaaccaaggattccaaatcttattggttttgtttcttcattatccatattctttctggaagagagagtgtaaga-tgaatttgaatgttg |
128 |
Q |
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| T |
13741703 |
tatttctgcacaaccaagtattccaaatcttattggttttgtttcttcaaaagccatattctttctggaagagagagtgtaagagtggatgtgagtgttg |
13741604 |
T |
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| Q |
129 |
caattggttataccaagagtacttgg |
154 |
Q |
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| T |
13741603 |
c--ttggttataccaagagtacttgg |
13741580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 13747203 - 13747080
Alignment:
| Q |
30 |
tatttctgcacaaccaaggattccaaatcttattggttttgtttcttcattatccatattctttctggaagagagagtgtaaga-tgaatttgaatgttg |
128 |
Q |
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| T |
13747203 |
tatttctgcacaaccaagtattccaaatcttattggttttgtttcttcaaaagccatattctttctggaagagagagtgtaagagtggatgtgagtgttg |
13747104 |
T |
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| Q |
129 |
caattggttataccaagagtacttgg |
154 |
Q |
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| T |
13747103 |
c--ttggttataccaagagtacttgg |
13747080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 13760045 - 13759966
Alignment:
| Q |
34 |
tctgcacaaccaaggattccaaatcttattggttttgtttcttcattatccatattctttctggaagagagagtgtaaga |
113 |
Q |
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| T |
13760045 |
tctgcacaaccaaggattccaaatcttattggttttgtttcttcatgagccatattctttttggaagagagagtggaaga |
13759966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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