View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15424_high_13 (Length: 401)
Name: NF15424_high_13
Description: NF15424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15424_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 19 - 390
Target Start/End: Original strand, 3580482 - 3580853
Alignment:
| Q |
19 |
gtaactgctagaggcctgacttgtagggaaaatttaacgagtgccacagtttgcatcccctattttactctcaaattaccactgtttggaaggacacttt |
118 |
Q |
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| T |
3580482 |
gtaactgctagaggcctgacttgtagggaaaatttaacgagtgccacagtttgcatcccctattttactctcaaattaccactgtttggaaggacacttt |
3580581 |
T |
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| Q |
119 |
gagaaggcaccactcaaaattgcatatattccatctaaatgttatgtcaattttataatgcatgaataagtattgaatcatcataaatctgtcaaataca |
218 |
Q |
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| T |
3580582 |
gagaaggcaccactcaaaattgcatatattccatctaaatgttatgtcaattttataatgcatgaataagtattgaatcatcataaatctgtcaaataca |
3580681 |
T |
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| Q |
219 |
ctattagaaatgtgctactgataacattatgggacaaattgagaaattatctataagacaaaacccaaaatgtcaacttttggacaatttatttagattc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3580682 |
ctattagaaatgtgctactgataacattatgggacaaattgagaaattatctataagacaaaacccaaaatgtcaacttttggacaatttatttagattc |
3580781 |
T |
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| Q |
319 |
gaaatacatgcacactccttgttctccctcccatcctcatcattgccaccgcctctcggtgttcctctctct |
390 |
Q |
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| T |
3580782 |
gaaatacatgcacactccttgttctccctcccatcctcatcattgccaccgcctctcggtgttcctctctct |
3580853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 3572065 - 3572126
Alignment:
| Q |
37 |
acttgtagggaaaatttaacgagtgccacagtttgcatcccctattttactctcaaattacc |
98 |
Q |
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| T |
3572065 |
acttgtagggaaaacttaacgagtgccacaatttgcatctcctattttactctcaaattacc |
3572126 |
T |
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