View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15424_high_20 (Length: 307)

Name: NF15424_high_20
Description: NF15424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15424_high_20
NF15424_high_20
[»] chr6 (8 HSPs)
chr6 (70-181)||(31442516-31442627)
chr6 (125-180)||(26840415-26840470)
chr6 (111-181)||(31665629-31665700)
chr6 (72-180)||(7867910-7868018)
chr6 (111-178)||(15296147-15296215)
chr6 (125-184)||(26839985-26840044)
chr6 (74-180)||(826696-826802)
chr6 (96-180)||(20915983-20916067)
[»] chr7 (5 HSPs)
chr7 (70-180)||(20077302-20077412)
chr7 (124-180)||(48850726-48850782)
chr7 (70-180)||(4407779-4407887)
chr7 (125-180)||(11072196-11072251)
chr7 (124-180)||(39742308-39742364)
[»] chr8 (7 HSPs)
chr8 (70-182)||(26981033-26981145)
chr8 (70-180)||(26083903-26084013)
chr8 (111-181)||(42315341-42315412)
chr8 (66-180)||(23828343-23828458)
chr8 (134-181)||(7496757-7496804)
chr8 (70-142)||(5334311-5334383)
chr8 (124-180)||(42932716-42932772)
[»] chr2 (6 HSPs)
chr2 (124-177)||(21922337-21922390)
chr2 (110-180)||(38996520-38996590)
chr2 (124-181)||(6667462-6667519)
chr2 (125-181)||(32281485-32281541)
chr2 (98-180)||(28125536-28125618)
chr2 (124-181)||(28926074-28926132)
[»] chr5 (4 HSPs)
chr5 (111-180)||(37337323-37337393)
chr5 (111-181)||(26110687-26110758)
chr5 (124-179)||(22780073-22780128)
chr5 (70-142)||(9045161-9045233)
[»] chr4 (8 HSPs)
chr4 (111-180)||(12094856-12094925)
chr4 (124-180)||(9199512-9199568)
chr4 (124-180)||(24257703-24257759)
chr4 (110-177)||(9451245-9451312)
chr4 (70-169)||(10427608-10427706)
chr4 (107-181)||(6898749-6898823)
chr4 (70-180)||(9199750-9199860)
chr4 (124-180)||(27067874-27067930)
[»] chr3 (7 HSPs)
chr3 (124-181)||(15291460-15291517)
chr3 (110-181)||(39484808-39484880)
chr3 (124-180)||(1529165-1529222)
chr3 (124-181)||(52041398-52041455)
chr3 (133-180)||(49235500-49235547)
chr3 (124-181)||(15996393-15996450)
chr3 (150-182)||(1141742-1141774)
[»] chr1 (3 HSPs)
chr1 (125-180)||(15700721-15700776)
chr1 (131-181)||(44508600-44508650)
chr1 (131-168)||(24819195-24819232)


Alignment Details
Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 70 - 181
Target Start/End: Complemental strand, 31442627 - 31442516
Alignment:
Q  70 tgattaggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagcttta 169  Q
    ||||||||| ||||| | |||| || |||||| |||||  |||||| |||| | ||||||||||||||||||| || || ||||||||||||||||||||    
T  31442627 tgattaggaaaagcacttaggagaatttaatgcttggatgatggagggaaaatattaggttaaaattagggtatgtgattgcttgaccaaacaagcttta 31442528  T
Q  170 gaaagaaagata 181  Q
    | ||||||||||    
T  31442527 gtaagaaagata 31442516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 26840470 - 26840415
Alignment:
Q  125 taggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 180  Q
    |||||||| |||||||| | | || |||||||||||||||||||||||||||||||    
T  26840470 taggttaagattagggttaatgatggcttgaccaaacaagctttagaaagaaagat 26840415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 31665629 - 31665700
Alignment:
Q  111 tggagagaaatttttaggttaa-aattagggtaagttatagcttgaccaaacaagctttagaaagaaagata 181  Q
    ||||| |||| | ||||||||| ||||||||| | | |||||||||||||||||||||||| ||||||||||    
T  31665629 tggagggaaaatattaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagata 31665700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 180
Target Start/End: Original strand, 7867910 - 7868018
Alignment:
Q  72 attaggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagctttaga 171  Q
    |||| |||||||| | || |||| | |||| ||| ||||||||| |||| | ||||| | ||||||||||| |  |||||||||||| | |||||||||     
T  7867910 attaagataagcacttagaaaaattaaatgcttgtacaatggagggaaaatattagggttaaattagggtatgagatagcttgaccagataagctttagt 7868009  T
Q  172 aagaaagat 180  Q
    |||||||||    
T  7868010 aagaaagat 7868018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 15296215 - 15296147
Alignment:
Q  111 tggagagaaatttttaggttaaaa-ttagggtaagttatagcttgaccaaacaagctttagaaagaaag 178  Q
    ||||| |||| | ||||||||||| ||||||| | |||||||||||| ||||||||||||| |||||||    
T  15296215 tggagggaaaatattaggttaaaaattagggttacttatagcttgacaaaacaagctttagtaagaaag 15296147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 184
Target Start/End: Complemental strand, 26840044 - 26839985
Alignment:
Q  125 taggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagatacat 184  Q
    |||||||| |||||||| | | || |||||| ||||||| ||||||||||||||||||||    
T  26840044 taggttaagattagggttaatgatggcttgatcaaacaaactttagaaagaaagatacat 26839985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 180
Target Start/End: Original strand, 826696 - 826802
Alignment:
Q  74 taggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaa 173  Q
    ||||| ||||| ||| ||||| | |||| |||| | |||||| |||| | |||||||||||||| ||| |   |||||||||||| ||||| ||||| ||    
T  826696 taggaaaagcactaacgaaaattaaatgattgggcgatggagggaaaatattaggttaaaattaaggtgaacaatagcttgaccagacaagttttagtaa 826795  T
Q  174 gaaagat 180  Q
    |||||||    
T  826796 gaaagat 826802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 20915983 - 20916067
Alignment:
Q  96 ttaatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 180  Q
    |||||| |||||  |||||| |||| | |||||||||||||| ||||   ||| |||||| || ||||||||||| |||||||||    
T  20915983 ttaatgcttggatgatggagggaaaatattaggttaaaattaaggtatcatattgcttgatcagacaagctttagtaagaaagat 20916067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 70 - 180
Target Start/End: Original strand, 20077302 - 20077412
Alignment:
Q  70 tgattaggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagcttta 169  Q
    ||||||||| ||||| |||||  || |||||| |||||  |||||| |||| | ||||||||||||||||||| | ||| ||||||||||||||||||||    
T  20077302 tgattaggaaaagcactaaggtgaatttaatgcttggatgatggagggaaaatattaggttaaaattagggtatgatattgcttgaccaaacaagcttta 20077401  T
Q  170 gaaagaaagat 180  Q
    | |||||||||    
T  20077402 gtaagaaagat 20077412  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 48850782 - 48850726
Alignment:
Q  124 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 180  Q
    ||||||||| ||||||||||   ||||||||| || |||||||||||||||||||||    
T  48850782 ttaggttaagattagggtaaacaatagcttgatcagacaagctttagaaagaaagat 48850726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 180
Target Start/End: Complemental strand, 4407887 - 4407779
Alignment:
Q  70 tgattaggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagcttta 169  Q
    ||||||||| || || |||||| || |||||| ||||   |||||| |||| | ||||||||||||||||||| | ||| ||||||||| ||  ||||||    
T  4407887 tgattaggaaaaacactaaggagaatttaatgtttgggtgatggagggaaaatattaggttaaaattagggtatgatattgcttgaccagac--gcttta 4407790  T
Q  170 gaaagaaagat 180  Q
    | |||||||||    
T  4407789 gtaagaaagat 4407779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 11072196 - 11072251
Alignment:
Q  125 taggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 180  Q
    ||||||||||||||||| ||  || ||||||||  |||||||||||||||||||||    
T  11072196 taggttaaaattagggttagggattgcttgaccggacaagctttagaaagaaagat 11072251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 39742308 - 39742364
Alignment:
Q  124 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 180  Q
    ||||||||| |||||||| |   ||||||||| |||||||||||||| |||||||||    
T  39742308 ttaggttaagattagggttatcaatagcttgatcaaacaagctttagtaagaaagat 39742364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 182
Target Start/End: Complemental strand, 26981145 - 26981033
Alignment:
Q  70 tgattaggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagcttta 169  Q
    ||||||||| || || |||||| || |||||| |||||  ||||||  ||| | ||||||||||||||||||| | ||| |||||| |||||||||||||    
T  26981145 tgattaggaaaaacactaaggagaatttaatgcttggatgatggaggaaaaatattaggttaaaattagggtatgatattgcttgatcaaacaagcttta 26981046  T
Q  170 gaaagaaagatac 182  Q
    | |||||||||||    
T  26981045 gtaagaaagatac 26981033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 180
Target Start/End: Complemental strand, 26084013 - 26083903
Alignment:
Q  70 tgattaggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagcttta 169  Q
    ||||||||| ||||| |||| | || |||||| || ||  |||||| |||| | ||||||||||||||||||| | ||| ||||||||| ||||||||||    
T  26084013 tgattaggaaaagcactaagaagaatttaatgctttgatgatggagggaaaatattaggttaaaattagggtatgatattgcttgaccagacaagcttta 26083914  T
Q  170 gaaagaaagat 180  Q
    | |||||||||    
T  26083913 gtaagaaagat 26083903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 181
Target Start/End: Complemental strand, 42315412 - 42315341
Alignment:
Q  111 tggagagaaatttttaggttaa-aattagggtaagttatagcttgaccaaacaagctttagaaagaaagata 181  Q
    ||||| |||| | ||||||||| ||||||||| | | |||||||||||||||||||||||| ||||||||||    
T  42315412 tggagggaaaatattaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagata 42315341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 180
Target Start/End: Complemental strand, 23828458 - 23828343
Alignment:
Q  66 atgctgattaggataagcaataaggaaaaattaatggttgga-caatggagagaaatttttaggttaaaa-ttagggtaagttatagcttgaccaaacaa 163  Q
    |||||||||||||||| || ||||||  |||||| || || | || ||||| |||| | ||||||||||| ||||||| | | |||||||||||||||||    
T  23828458 atgctgattaggataaacactaaggagtaattaa-ggctgaagcattggagggaaaatattaggttaaaaattagggttactaatagcttgaccaaacaa 23828360  T
Q  164 gctttagaaagaaagat 180  Q
    ||| ||| |||||||||    
T  23828359 gctctagtaagaaagat 23828343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 181
Target Start/End: Complemental strand, 7496804 - 7496757
Alignment:
Q  134 attagggtaagttatagcttgaccaaacaagctttagaaagaaagata 181  Q
    |||||||| || |||||||||| |||||||||||||| ||||||||||    
T  7496804 attagggtcagctatagcttgatcaaacaagctttagtaagaaagata 7496757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 142
Target Start/End: Complemental strand, 5334383 - 5334311
Alignment:
Q  70 tgattaggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggta 142  Q
    ||||||||| ||||| ||| || || |||||| |||||  |||||| |||| | |||||||||||||||||||    
T  5334383 tgattaggaaaagcattaaagagaatttaatgcttggatgatggagggaaaatcttaggttaaaattagggta 5334311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 42932772 - 42932716
Alignment:
Q  124 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 180  Q
    |||||||||||||||| || | ||| |||||| || ||||||||||| |||||||||    
T  42932772 ttaggttaaaattaggatatgatattgcttgatcagacaagctttagtaagaaagat 42932716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 21922390 - 21922337
Alignment:
Q  124 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaa 177  Q
    ||||||||| |||||||||||||||||||||| || ||||||||||||||||||    
T  21922390 ttaggttaagattagggtaagttatagcttgatcagacaagctttagaaagaaa 21922337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 38996520 - 38996590
Alignment:
Q  110 atggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 180  Q
    |||||| |||| | ||||||||||||||||||||  |||||||||| || ||||||||||| |||||||||    
T  38996520 atggagggaaaatattaggttaaaattagggtaacatatagcttgatcagacaagctttagtaagaaagat 38996590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 6667519 - 6667462
Alignment:
Q  124 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagata 181  Q
    ||||||||  ||||||||||   |||||||||||||||||||||||||||||||||||    
T  6667519 ttaggttaggattagggtaaacaatagcttgaccaaacaagctttagaaagaaagata 6667462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 32281541 - 32281485
Alignment:
Q  125 taggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagata 181  Q
    ||||||||||||||||| | | ||||||||||||||||| |||||| ||||||||||    
T  32281541 taggttaaaattagggttactaatagcttgaccaaacaaactttagtaagaaagata 32281485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 28125618 - 28125536
Alignment:
Q  98 aatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 180  Q
    |||| ||| ||||||||| |||| | ||||| | ||||||||||| |  |||||||||||| ||||||||||| |||||||||    
T  28125618 aatgcttgtacaatggagggaaaatattagggttaaattagggtatgagatagcttgaccagacaagctttagtaagaaagat 28125536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 28926132 - 28926074
Alignment:
Q  124 ttaggttaa-aattagggtaagttatagcttgaccaaacaagctttagaaagaaagata 181  Q
    ||||||||| ||||||||| | | |||||||||||| ||||||||||| ||||||||||    
T  28926132 ttaggttaagaattagggttactaatagcttgaccagacaagctttagtaagaaagata 28926074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 37337393 - 37337323
Alignment:
Q  111 tggagagaaatttttaggttaaaa-ttagggtaagttatagcttgaccaaacaagctttagaaagaaagat 180  Q
    ||||| |||| | ||||||||||| ||||||| | |||||||||||||||||||||||||| |||||||||    
T  37337393 tggagggaaaatattaggttaaaaattagggttacttatagcttgaccaaacaagctttagtaagaaagat 37337323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 181
Target Start/End: Complemental strand, 26110758 - 26110687
Alignment:
Q  111 tggagagaaatttttaggttaaaa-ttagggtaagttatagcttgaccaaacaagctttagaaagaaagata 181  Q
    ||||| |||| | ||||||||||| ||||||| | |||||||||||||||||||| ||||| ||||||||||    
T  26110758 tggagggaaaatattaggttaaaaattagggttacttatagcttgaccaaacaagttttagtaagaaagata 26110687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 22780073 - 22780128
Alignment:
Q  124 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaaga 179  Q
    ||||||||| ||||||||||   ||||||||| || ||||||||||||||||||||    
T  22780073 ttaggttaagattagggtaaacaatagcttgatcagacaagctttagaaagaaaga 22780128  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 142
Target Start/End: Complemental strand, 9045233 - 9045161
Alignment:
Q  70 tgattaggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggta 142  Q
    ||||||||| ||||| |||||| || |||||| || ||  |||||| |||| | |||||||||||||||||||    
T  9045233 tgattaggaaaagcactaaggagaatttaatgttttgatgatggagggaaaatattaggttaaaattagggta 9045161  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 12094856 - 12094925
Alignment:
Q  111 tggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 180  Q
    ||||| |||| | ||||||||||||||||||   | |||||||||||||||||||||||| |||||||||    
T  12094856 tggagggaaaatattaggttaaaattagggtttctaatagcttgaccaaacaagctttagtaagaaagat 12094925  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 9199568 - 9199512
Alignment:
Q  124 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 180  Q
    ||||||||||||||||||| | ||| ||||||||| ||||||||||| |||||||||    
T  9199568 ttaggttaaaattagggtatgatattgcttgaccagacaagctttagtaagaaagat 9199512  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 24257759 - 24257703
Alignment:
Q  124 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 180  Q
    |||||||||||||||||| |   || ||||||||||||||||||||| |||||||||    
T  24257759 ttaggttaaaattagggtgaacaattgcttgaccaaacaagctttagtaagaaagat 24257703  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 9451312 - 9451245
Alignment:
Q  110 atggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaa 177  Q
    |||||| |||| | |||||||||||||||||| |   |||||||||||| ||||||||||| ||||||    
T  9451312 atggagggaaaatattaggttaaaattagggtgaacaatagcttgaccagacaagctttagtaagaaa 9451245  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 169
Target Start/End: Original strand, 10427608 - 10427706
Alignment:
Q  70 tgattaggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagcttta 169  Q
    ||||||||| || || |||| | || |||||| |||||  |||||| ||||| || ||||||||||||||||| | ||| |||||||||||||| |||||    
T  10427608 tgattaggaaaaacactaagaagaatttaatgcttggatgatggagggaaatatt-aggttaaaattagggtatgatattgcttgaccaaacaaccttta 10427706  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 6898749 - 6898823
Alignment:
Q  107 acaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagata 181  Q
    ||||||||  |||| | ||||||||| |||||||| |   ||||||||| |||||||||||||| ||||||||||    
T  6898749 acaatggacggaaaatattaggttaagattagggttaccaatagcttgatcaaacaagctttagtaagaaagata 6898823  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 180
Target Start/End: Complemental strand, 9199860 - 9199750
Alignment:
Q  70 tgattaggataagcaataaggaaaaattaatggttggacaatggagagaaatttttaggttaaaattagggtaagttatagcttgaccaaacaagcttta 169  Q
    ||||||||| ||| | |||||| || |||||| |||||  |||||| |||| | ||||||||| | | || || | ||| ||||||||| ||||||||||    
T  9199860 tgattaggaaaagaactaaggagaatttaatgcttggatgatggagggaaaatattaggttaatagtgggatatgatattgcttgaccagacaagcttta 9199761  T
Q  170 gaaagaaagat 180  Q
    | |||||||||    
T  9199760 gtaagaaagat 9199750  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 27067930 - 27067874
Alignment:
Q  124 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 180  Q
    |||| ||||||||||||||    |||| ||||||||||||||||||| |||||||||    
T  27067930 ttagattaaaattagggtataggatagtttgaccaaacaagctttagtaagaaagat 27067874  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 15291517 - 15291460
Alignment:
Q  124 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagata 181  Q
    ||||||||| ||||||||||   |||||||||||||||||||||||| ||||||||||    
T  15291517 ttaggttaagattagggtaaacaatagcttgaccaaacaagctttagtaagaaagata 15291460  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 110 - 181
Target Start/End: Original strand, 39484808 - 39484880
Alignment:
Q  110 atggagagaaatttttaggttaaaattagggt-aagttatagcttgaccaaacaagctttagaaagaaagata 181  Q
    |||||| |||| | ||||||||||| |||||| ||  ||||||||||||||||||||||||| ||||||||||    
T  39484808 atggagggaaaatattaggttaaaactagggtgaacatatagcttgaccaaacaagctttagtaagaaagata 39484880  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 1529222 - 1529165
Alignment:
Q  124 ttaggttaa-aattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 180  Q
    ||||||||| ||||||||| | | |||||||||||||||||||||||| |||||||||    
T  1529222 ttaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagat 1529165  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 52041398 - 52041455
Alignment:
Q  124 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagata 181  Q
    |||||||||||||||||| |   |||||||||||| ||||||||||| ||||||||||    
T  52041398 ttaggttaaaattagggtgaacaatagcttgaccagacaagctttagtaagaaagata 52041455  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 49235500 - 49235547
Alignment:
Q  133 aattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 180  Q
    ||||||||||| | ||||||||||||||||| |||||| |||||||||    
T  49235500 aattagggtaaatgatagcttgaccaaacaaactttagtaagaaagat 49235547  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 15996393 - 15996450
Alignment:
Q  124 ttaggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagata 181  Q
    |||||||| |||||||||||   ||||||||| || ||||||||||| ||||||||||    
T  15996393 ttaggttagaattagggtaaacaatagcttgatcagacaagctttagtaagaaagata 15996450  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 182
Target Start/End: Complemental strand, 1141774 - 1141742
Alignment:
Q  150 gcttgaccaaacaagctttagaaagaaagatac 182  Q
    ||||||||||||||||||||| |||||||||||    
T  1141774 gcttgaccaaacaagctttagtaagaaagatac 1141742  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 180
Target Start/End: Complemental strand, 15700776 - 15700721
Alignment:
Q  125 taggttaaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagat 180  Q
    ||||||||||||||||| | | ||||||||||||||||| |||||| |||||||||    
T  15700776 taggttaaaattagggttactaatagcttgaccaaacaaactttagtaagaaagat 15700721  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 44508650 - 44508600
Alignment:
Q  131 aaaattagggtaagttatagcttgaccaaacaagctttagaaagaaagata 181  Q
    ||||||||||| ||| ||||||||| || ||||||||||||||||||||||    
T  44508650 aaaattagggttagtaatagcttgatcagacaagctttagaaagaaagata 44508600  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 168
Target Start/End: Complemental strand, 24819232 - 24819195
Alignment:
Q  131 aaaattagggtaagttatagcttgaccaaacaagcttt 168  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  24819232 aaaattagggttagtaatagcttgaccaaacaagcttt 24819195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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