View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15424_high_6 (Length: 518)
Name: NF15424_high_6
Description: NF15424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15424_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 11 - 343
Target Start/End: Complemental strand, 28128873 - 28128547
Alignment:
| Q |
11 |
gagatgaacagaaagattggaaccgagactttcaacaagatggagtttacaagaatgaagtaagcaagcttaaacgcgaaccaaaggttaaacacggtcg |
110 |
Q |
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| T |
28128873 |
gagaagaacagaaagattggaaccgagactttcaacaagatggagtttacaagaatgaggtaagcaagcttaaacgcgaaccaaaggttaaacactgtcg |
28128774 |
T |
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| Q |
111 |
aatgaaacacctgttctgaaaaaggagagaaaataaacaattaatagaatagtcccacaccgggtggttttggaaacagagaaaagatacaagtctataa |
210 |
Q |
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| T |
28128773 |
aatgaaacacctgttatgaaaaaggagagaaaataaacaattaatagaatagtcccacaccgggtggttttggaaacagagaaaagatacaagtctataa |
28128674 |
T |
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| Q |
211 |
aagcaacgagtgacggtaagggattagcatgcattagaggatacttcatagggtaattaagcatcgaaggtttcagcattgtggattttatcaaagtgga |
310 |
Q |
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| T |
28128673 |
aagcaacgagtgacggtaagggattagcattcattagaggatacttcatggtgtaattaaacatcgaag-----aacattgtggattttatcacagtgga |
28128579 |
T |
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| Q |
311 |
aacatattgtttcaaaaaatcaatgaaacaatt |
343 |
Q |
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| T |
28128578 |
aatagattgtttc-aaaaatcaatgtaacaatt |
28128547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 409 - 501
Target Start/End: Complemental strand, 28125503 - 28125409
Alignment:
| Q |
409 |
gttttggagttttacgttgttatctgagatatttgtaaatgatccattatcgtatgtgtttgttttt--attttctttcttgaacagataaaact |
501 |
Q |
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| T |
28125503 |
gttttggaattttacgttgttatctgagatatttgtaaatgatccattatcaaatgtgttcgttttttcttcttctttcttgaacagataaaact |
28125409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 420
Target Start/End: Complemental strand, 28125537 - 28125504
Alignment:
| Q |
387 |
atttacaatgcaacaagcataagttttggagttt |
420 |
Q |
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| T |
28125537 |
atttacaatgcaacaaacataagttttggagttt |
28125504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 20026705 - 20026782
Alignment:
| Q |
36 |
agactttcaacaagatggagtttacaagaatgaagtaagcaagcttaaacgcgaaccaaaggttaaacacggtcgaat |
113 |
Q |
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| T |
20026705 |
agactttcaacaaggttgagtttacatgaatgatgtaaagaagagtaaccgcgaaccaaagagtaaacacggtcgaat |
20026782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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