View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15424_high_7 (Length: 490)
Name: NF15424_high_7
Description: NF15424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15424_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 17 - 481
Target Start/End: Original strand, 26495458 - 26495925
Alignment:
| Q |
17 |
acaaagtgctctcccttgcatgctatgaagcatcaacacagacacgaatacagtcactagatatgacactgacacgtcaacatcaa---taattccaaca |
113 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
26495458 |
acaaagtgctctcccttgcatgctatgaggcatcaacacagacacgaatacagtcactagatacgacactgacacgtcaacatcaacaataattccaaca |
26495557 |
T |
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| Q |
114 |
cgtgtcaaacaacaaacacaatctttaattcgaagtgttagtgcaacatagcttgcatgtatttcacaaaacttttcttttggctcacatcattcatttg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26495558 |
cgtgtcaaacaacaaacacaatctttaattcgaagtgttagtgcaacatagcttgcatgtatttcacaaaacttttcttttggctcacatcattcatttg |
26495657 |
T |
|
| Q |
214 |
ggtaaataaacaaattcaacaactaattccacattgcttaacatcaggccccttagttttcaacacaaaagggtcgattcttacccaaaccaaagaaaag |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26495658 |
ggtaaataaacaaattcaacaactaattccacattgcttaacatcaggccccttagttttcaacacaaaagggtcgattcttacccaaaccaaagaaaag |
26495757 |
T |
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| Q |
314 |
atagaagccaaaagcacagaccaaatgacaacaagagttggtgttctattctgtcttcccattagtcctttaaggaaaggataaagatgagcaataaccc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26495758 |
atagaagccaaaagcacagaccaaatgacaacaagagttggtgttctattctgtcttcccattagtcctttaaggaaaggataaagatgagcaataaccc |
26495857 |
T |
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| Q |
414 |
atgaagaaaagaacagtttcccaatcaatgctccccattcatgttcaccactatttatagcatctgtg |
481 |
Q |
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| T |
26495858 |
atgaagaaaagaacagtttcccaatcaatgctccccattcatgttcaccactatttatagcatctgtg |
26495925 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 347
Target Start/End: Original strand, 54380966 - 54381057
Alignment:
| Q |
256 |
atcaggccccttagttttcaacacaaaagggtcgattcttacccaaaccaaagaaaagatagaagccaaaagcacagaccaaatgacaacaa |
347 |
Q |
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|||||| ||||||||||||| ||| || ||||| ||||||||||| | |||||| || || |||||||| | ||| ||||| || ||||||| |
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| T |
54380966 |
atcaggtcccttagttttcatcacgaatgggtcaattcttacccataacaaagagaaaatggaagccaacaacactgaccatatcacaacaa |
54381057 |
T |
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