View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15424_low_10 (Length: 470)

Name: NF15424_low_10
Description: NF15424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15424_low_10
NF15424_low_10
[»] chr5 (11 HSPs)
chr5 (6-202)||(30240465-30240669)
chr5 (331-454)||(30240788-30240918)
chr5 (189-335)||(30751401-30751543)
chr5 (247-335)||(30240668-30240751)
chr5 (197-299)||(30675510-30675606)
chr5 (389-454)||(30437379-30437444)
chr5 (389-454)||(29873755-29873821)
chr5 (204-239)||(30519942-30519977)
chr5 (204-239)||(30560282-30560317)
chr5 (392-453)||(29854893-29854954)
chr5 (256-293)||(29873947-29873984)
[»] chr4 (1 HSPs)
chr4 (193-332)||(20294808-20294938)
[»] chr7 (2 HSPs)
chr7 (331-362)||(26708995-26709026)
chr7 (208-239)||(26709091-26709122)


Alignment Details
Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 6 - 202
Target Start/End: Original strand, 30240465 - 30240669
Alignment:
Q  6 actgaaatgaaatttgacatttaattaaataaatagaatgtaaaacaaattacatatagcatcataacctgtcccaaaatatacctcaaat--------- 96  Q
    |||| |||||||||| ||||||||| |||||||||||||||||||||||| ||||||  ||||||||| |||||||||| |||||||||||             
T  30240465 actggaatgaaattttacatttaatcaaataaatagaatgtaaaacaaat-acatatgacatcataac-tgtcccaaaagatacctcaaatttattataa 30240562  T
Q  97 -gtaaattttgttagtgttcttgtatgaaaacaaataaactaaatcaatttcttcccaacaattatacatgccagtagggacaccccatctcttaatgga 195  Q
     ||||||||| ||||||||| |||||||||||||| ||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30240563 agtaaattttattagtgttcatgtatgaaaacaaagaaattaaataaaattctttccaacaattatacatgccagtagggacaccccatctcttaatgga 30240662  T
Q  196 ccccgat 202  Q
    |||||||    
T  30240663 ccccgat 30240669  T

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Target: chr5; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 331 - 454
Target Start/End: Original strand, 30240788 - 30240918
Alignment:
Q  331 ttattctcaaagttcttcattctgtttacttttaacactcaagtcaatctaaaaccaatttct--------tatcttttcaactctttcttttaccaaaa 422  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||||    
T  30240788 ttattctcaaagttcttcattctgtttacttttaacactca-gtcaatctaaaaccaatttctcatttacttatcttttcaactctttcttttaccaaaa 30240886  T
Q  423 aatggctgatgcgttgctcggagttgtgtttg 454  Q
    |||||||||||||||| |||||||||||||||    
T  30240887 aatggctgatgcgttgatcggagttgtgtttg 30240918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 189 - 335
Target Start/End: Complemental strand, 30751543 - 30751401
Alignment:
Q  189 taatggaccccgataataaatttgtgattgaaaatgtgtgtcctacaaacagtacccaatcaataataatggaaccttgcaagacagttgcataaatttg 288  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||   || ||||||||||||||||||||||||||  |||||||||||| ||    
T  30751543 taatggaccccgatgataaatttgtgattgaaaatgtgcgtcctacaaaca---cctaatcaataataatggaaccttgcaagcaagttgcataaatctg 30751447  T
Q  289 tggttaaaaatacgccacacctacttgaatgtttgctcacaattatt 335  Q
    ||||| ||||||||||  || ||| ||||||||||||||||||||||    
T  30751446 tggttgaaaatacgcc-tacgtacgtgaatgtttgctcacaattatt 30751401  T

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Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 247 - 335
Target Start/End: Original strand, 30240668 - 30240751
Alignment:
Q  247 atcaataataatggaaccttgcaagacagttgcataaatttgtggttaaaaatacgccacacctacttgaatgtttgctcacaattatt 335  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||| |     ||||||||||||||||||||||||||||    
T  30240668 atcaataataatggaaccttgcaagcaagttgcataaatttgtggttaaaaatatg-----cctacttgaatgtttgctcacaattatt 30240751  T

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Target: chr5; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 197 - 299
Target Start/End: Original strand, 30675510 - 30675606
Alignment:
Q  197 cccgataataaatttgtgattgaaaatgtgtgtcctacaaacagtacccaatcaataataatggaaccttgcaagacagttgcataaatttgtggttaaa 296  Q
    |||||||| |||||||||||||||||||||||||||| ||||   ||||||||   |||||||||||||||||||  ||||||||||| |||||||| ||    
T  30675510 cccgataacaaatttgtgattgaaaatgtgtgtcctagaaac---acccaatc---aataatggaaccttgcaagcaagttgcataaacttgtggttgaa 30675603  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 454
Target Start/End: Complemental strand, 30437444 - 30437379
Alignment:
Q  389 tttcttatcttttcaactctttcttttaccaaaaaatggctgatgcgttgctcggagttgtgtttg 454  Q
    |||||||||||||||||||||| ||||  ||||||||||||||| | || || |||||||||||||    
T  30437444 tttcttatcttttcaactcttttttttctcaaaaaatggctgatccctttcttggagttgtgtttg 30437379  T

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Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 454
Target Start/End: Complemental strand, 29873821 - 29873755
Alignment:
Q  389 tttcttatcttttcaactctttcttttac-caaaaaatggctgatgcgttgctcggagttgtgtttg 454  Q
    ||||||||||||||||||||||  ||| | |||||||||||| | || |||||||||||||||||||    
T  29873821 tttcttatcttttcaactcttttgttttcacaaaaaatggctaacgctttgctcggagttgtgtttg 29873755  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 239
Target Start/End: Original strand, 30519942 - 30519977
Alignment:
Q  204 ataaatttgtgattgaaaatgtgtgtcctacaaaca 239  Q
    |||||||||||||||||||| |||||||||||||||    
T  30519942 ataaatttgtgattgaaaatctgtgtcctacaaaca 30519977  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 239
Target Start/End: Original strand, 30560282 - 30560317
Alignment:
Q  204 ataaatttgtgattgaaaatgtgtgtcctacaaaca 239  Q
    |||||||||||||||||||| |||||||||||||||    
T  30560282 ataaatttgtgattgaaaatctgtgtcctacaaaca 30560317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 453
Target Start/End: Complemental strand, 29854954 - 29854893
Alignment:
Q  392 cttatcttttcaactctttcttttaccaaaaaatggctgatgcgttgctcggagttgtgttt 453  Q
    ||||| ||||||||||||| ||||  ||||||||||| || || || |||||||||||||||    
T  29854954 cttatattttcaactctttgttttcacaaaaaatggccgacgctttactcggagttgtgttt 29854893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 29873984 - 29873947
Alignment:
Q  256 aatggaaccttgcaagacagttgcataaatttgtggtt 293  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  29873984 aatggaaccttgcaagcaagttgcataaatttgtggtt 29873947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 193 - 332
Target Start/End: Original strand, 20294808 - 20294938
Alignment:
Q  193 ggaccccgataataaatttgtgattgaaaatgtgtgtcctacaaacagtacccaatcaataataatggaaccttgcaagacagttgcataaatttgtggt 292  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||   |||||||| ||||||||||||| | |||||  |||||||||||||||||||    
T  20294808 ggaccacgataataaattcgtgattgaaaatgtgtgtcctacaaac---acccaatcgataataatggaacgtggcaagcaagttgcataaatttgtggt 20294904  T
Q  293 taaaaatacgccacacctacttgaatgtttgctcacaatt 332  Q
    | ||||||||      |||| |||||||||||||||||||    
T  20294905 tgaaaatacg------ctacgtgaatgtttgctcacaatt 20294938  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 362
Target Start/End: Complemental strand, 26709026 - 26708995
Alignment:
Q  331 ttattctcaaagttcttcattctgtttacttt 362  Q
    ||||||||||||||||||||||||||||||||    
T  26709026 ttattctcaaagttcttcattctgtttacttt 26708995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 239
Target Start/End: Complemental strand, 26709122 - 26709091
Alignment:
Q  208 atttgtgattgaaaatgtgtgtcctacaaaca 239  Q
    ||||||||||||||||||||||||||||||||    
T  26709122 atttgtgattgaaaatgtgtgtcctacaaaca 26709091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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