View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15424_low_11 (Length: 449)
Name: NF15424_low_11
Description: NF15424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15424_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 23 - 430
Target Start/End: Complemental strand, 2452037 - 2451629
Alignment:
| Q |
23 |
taccatcgttggactttattagggagtcaacacttatgtggatactcattggacagaaagaaaccacatgtatccatatctaatccacgtttgccacaaa |
122 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||| |
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| T |
2452037 |
taccattgttggactttattagggagtcaacacttatgtggatactcattggacagaaagaaatcacatgtatccatatctaatccacgctcagtacaaa |
2451938 |
T |
|
| Q |
123 |
atattttaaatatgacaaaattctagttcgtgtttggcatagatatccatactagtttaacatatgaggaaagtagtagcatgcatagacaattaaagca |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2451937 |
atattttaaatatgacaaaattctagttcgtgtttggcatagatatccataatagtttaacatatgaggaaagtagtagcatgcatagacaattaacgca |
2451838 |
T |
|
| Q |
223 |
tggtaaacatctaagagatattatcaagtggctaattggtatgttagtgttattctct-tttgccaggacttgaaacttggacatttaaactccttaacc |
321 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2451837 |
tggtaaacatctaagggatattatcaagtggctaattggtatgttagtgttattctctctttgccaggacttgaaacttggacatttaaactccttaacc |
2451738 |
T |
|
| Q |
322 |
gttaacttaaaagctgagccacctaacctccctattcatttgcacatttgatccatttatacgaattcaagtatgactcacttatatggtgcatggtaaa |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2451737 |
gttaacttaaaagctgagccacctaacctccctattcatttgcacatttgatccatttatacgaattcaagtatgactcacttatatggtgcatggtaaa |
2451638 |
T |
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| Q |
422 |
tatgtttaa |
430 |
Q |
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||||||||| |
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| T |
2451637 |
tatgtttaa |
2451629 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 7333191 - 7333247
Alignment:
| Q |
122 |
aatattttaaatatgacaaaattctagttcgtgtttggcatagatatccatactagt |
178 |
Q |
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|||||||||||||| || ||||||||| |||||||||||| | | ||||||||||| |
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| T |
7333191 |
aatattttaaatatcacgaaattctagctcgtgtttggcacgggtttccatactagt |
7333247 |
T |
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