View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15424_low_14 (Length: 415)
Name: NF15424_low_14
Description: NF15424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15424_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 119 - 399
Target Start/End: Complemental strand, 2350905 - 2350637
Alignment:
| Q |
119 |
atatggtacatcgtttgagattttctacttgagttaattaatacatttaaaaagaaactagtttatttttacaagattnnnnnnnnnnncaaactagtaa |
218 |
Q |
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| T |
2350905 |
atatggtacatcgtttgagattttctagttgagttaattaatacatttaaaaagagactagttttttt----aagattaaaaaaaaaa--aaactagtaa |
2350812 |
T |
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| Q |
219 |
ctacacannnnnnnattaaagagggnnnnnnn-gaaagagggttggagataaattggcttcatgatagatatgtcaaacctgcataatgcgtataccatt |
317 |
Q |
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| T |
2350811 |
ctacacaattttttattaaagagggttttttttgaaagagggttggagataaattggcttcatgatagatatgtcaaacctgcatg-------taccatt |
2350719 |
T |
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| Q |
318 |
ttaattacagcaaatgatgaattttctggcacaaactccacccaaaaggataaggtcgatttaatccaacaagcatattaac |
399 |
Q |
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||||||| ||||||||| ||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2350718 |
ttaattatagcaaatgacgaattttctaacacatactccacccaaaaggataaggtcgatttgatccaacaagcatattaac |
2350637 |
T |
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