View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15424_low_15 (Length: 410)
Name: NF15424_low_15
Description: NF15424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15424_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 31 - 382
Target Start/End: Complemental strand, 2013752 - 2013402
Alignment:
| Q |
31 |
aaattcatcgaaggaaaaaataaattcaagtataagggggttttaagtctcgttcgtacaagccactctttgtgaccttgaagtccatcatggttgaggg |
130 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2013752 |
aaattcatcgaaggaaaaaataaagtcaagaataagggg-ttttaagtctcgttcgtacaagccactctttgtgaccttgaagtccatcatggttgaggg |
2013654 |
T |
|
| Q |
131 |
tcttgaccacgacggtaagtccagtacatggtttcaccggtgccgttccattctcctcaatccaacctttgaagacacaaccgaatcctccctcgccaag |
230 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
2013653 |
tcttgaccgcgacggtaagtccagtacctggtttcactggtgcagttccattctcctcaatccaacctttgaatacacaaccgaatcctccctcaccaag |
2013554 |
T |
|
| Q |
231 |
aagactctcgggtcaaaaattcctagttgccatctttagctcattgaatgtgaactttctcaaatcagaagaaaccttcaactcttcgctgaacattgga |
330 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2013553 |
aagactctcgggtcggaaattcctagttgccatctttagctcattgaatgtgaactttctcaaatcagaagaaaccttcaactcttcgctgaacattgga |
2013454 |
T |
|
| Q |
331 |
gtggaagggatgctttctgcattactagttgtagaggatcctggaggagcac |
382 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2013453 |
gtggaaggaatactttctgcattactagttgtagaggatcctggaggagcac |
2013402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 87 - 323
Target Start/End: Complemental strand, 3168930 - 3168694
Alignment:
| Q |
87 |
tacaagccactctttgtgaccttgaagtccatcatggttgagggtcttgaccacgacggtaagtccagtacatggtttcaccggtgccgttccattctcc |
186 |
Q |
| |
|
||||||||| ||||||||||||||| |||||| || || ||| |||| ||| | || |||||||| |||| |||||||| || || ||||||||||| |
|
|
| T |
3168930 |
tacaagccattctttgtgaccttgatgtccattgtgattaaggatcttaaccgcaaccgtaagtccggtacccggtttcacaggcgcagttccattctct |
3168831 |
T |
|
| Q |
187 |
tcaatccaacctttgaagacacaaccgaatcctccctcgccaagaagactctcgggtcaaaaattcctagttgccatctttagctcattgaatgtgaact |
286 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| || || |||||||| || |||| |||||||||||||| | ||| || ||||||||||||| | |
|
|
| T |
3168830 |
tcaatccaacctttgaagacacaaccaaaacctccttcacctagaagactttctggtctgaaattcctagttgctaccttaagtccattgaatgtgaatt |
3168731 |
T |
|
| Q |
287 |
ttctcaaatcagaagaaaccttcaactcttcgctgaa |
323 |
Q |
| |
|
|||| ||| ||||| |||||||||||| |||||||| |
|
|
| T |
3168730 |
ttcttaaacaagaagcaaccttcaactcctcgctgaa |
3168694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 91 - 278
Target Start/End: Original strand, 25137918 - 25138105
Alignment:
| Q |
91 |
agccactctttgtgaccttgaagtccatcatggttgagggtcttgaccacgacggtaagtccagtacatggtttcaccggtgccgttccattctcctcaa |
190 |
Q |
| |
|
||||| ||||| ||||| || || ||||||||||| ||||| ||||| | || |||||||| || | |||||||| ||||| |||||||| || |||| |
|
|
| T |
25137918 |
agccattctttatgaccctggaggccatcatggttaagggttttgactgcaacagtaagtcctgtgccaggtttcactggtgcagttccattttcttcaa |
25138017 |
T |
|
| Q |
191 |
tccaacctttgaagacacaaccgaatcctccctcgccaagaagactctcgggtcaaaaattcctagttgccatctttagctcattgaa |
278 |
Q |
| |
|
|||| |||||||| |||||||| ||||| || || || |||||||||||||| | |||||| || ||||||| ||| || |||||||| |
|
|
| T |
25138018 |
tccatcctttgaacacacaaccaaatccaccttcaccgagaagactctcgggccgaaaatttcttgttgccaacttaagatcattgaa |
25138105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 91 - 278
Target Start/End: Complemental strand, 16888754 - 16888567
Alignment:
| Q |
91 |
agccactctttgtgaccttgaagtccatcatggttgagggtcttgaccacgacggtaagtccagtacatggtttcaccggtgccgttccattctcctcaa |
190 |
Q |
| |
|
||||| ||||| ||||| ||||| ||||| ||||| ||||| || || | || ||||| || || | |||||||| || || |||||||| || |||| |
|
|
| T |
16888754 |
agccattctttatgaccctgaagcccatcgtggttaagggtttttacagcaactgtaagccctgtgccaggtttcactggagcagttccattttcttcaa |
16888655 |
T |
|
| Q |
191 |
tccaacctttgaagacacaaccgaatcctccctcgccaagaagactctcgggtcaaaaattcctagttgccatctttagctcattgaa |
278 |
Q |
| |
|
||||||||||||| |||||||| || || || |||||||||| |||||| || | ||||| || ||||||| ||| || |||||||| |
|
|
| T |
16888654 |
tccaacctttgaaaacacaaccaaacccaccttcgccaagaaaactctcaggccggaaatttcttgttgccaacttaagttcattgaa |
16888567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University