View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15424_low_18 (Length: 340)

Name: NF15424_low_18
Description: NF15424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15424_low_18
NF15424_low_18
[»] chr1 (42 HSPs)
chr1 (21-305)||(32882489-32882767)
chr1 (18-295)||(34774984-34775262)
chr1 (18-295)||(27102304-27102572)
chr1 (20-295)||(10785152-10785426)
chr1 (66-294)||(46768343-46768566)
chr1 (119-284)||(16148990-16149155)
chr1 (126-295)||(32863237-32863406)
chr1 (18-267)||(31290740-31290987)
chr1 (18-224)||(16577374-16577579)
chr1 (18-85)||(6583117-6583184)
chr1 (88-295)||(11439711-11439919)
chr1 (18-139)||(27031687-27031806)
chr1 (31-111)||(52278430-52278509)
chr1 (18-89)||(16147671-16147742)
chr1 (63-177)||(46692627-46692739)
chr1 (50-144)||(7857800-7857893)
chr1 (239-295)||(9313031-9313087)
chr1 (50-206)||(46814246-46814401)
chr1 (31-177)||(5459289-5459434)
chr1 (63-177)||(24449738-24449850)
chr1 (54-144)||(24659080-24659168)
chr1 (184-293)||(2987816-2987924)
chr1 (64-177)||(5389230-5389340)
chr1 (243-295)||(376497-376549)
chr1 (235-295)||(38544407-38544467)
chr1 (182-269)||(6582968-6583055)
chr1 (210-284)||(52278589-52278661)
chr1 (18-99)||(41126362-41126443)
chr1 (21-116)||(9313179-9313272)
chr1 (247-294)||(42374526-42374573)
chr1 (178-295)||(46603636-46603751)
chr1 (233-295)||(41126142-41126204)
chr1 (245-294)||(50588964-50589014)
chr1 (250-295)||(17033939-17033984)
chr1 (64-177)||(41920619-41920730)
chr1 (248-295)||(37200485-37200532)
chr1 (126-217)||(38548845-38548934)
chr1 (239-293)||(38546876-38546930)
chr1 (245-285)||(19598990-19599031)
chr1 (102-230)||(38544511-38544637)
chr1 (126-166)||(24684310-24684350)
chr1 (233-293)||(27905760-27905819)
[»] chr2 (35 HSPs)
chr2 (18-295)||(10173270-10173545)
chr2 (20-295)||(7696077-7696351)
chr2 (18-277)||(37770359-37770610)
chr2 (18-214)||(16952154-16952350)
chr2 (18-214)||(17022819-17023015)
chr2 (18-214)||(17060125-17060321)
chr2 (18-295)||(34230314-34230591)
chr2 (150-295)||(4974990-4975135)
chr2 (150-295)||(4992898-4993043)
chr2 (77-295)||(12342992-12343195)
chr2 (66-206)||(387338-387476)
chr2 (18-202)||(14106305-14106488)
chr2 (63-202)||(7460836-7460974)
chr2 (50-197)||(7874438-7874583)
chr2 (18-206)||(5254371-5254553)
chr2 (31-177)||(39338674-39338818)
chr2 (18-213)||(1269596-1269787)
chr2 (219-295)||(13337565-13337640)
chr2 (63-170)||(17116694-17116800)
chr2 (31-177)||(10524228-10524373)
chr2 (133-295)||(41113431-41113590)
chr2 (248-295)||(22884805-22884852)
chr2 (249-295)||(33788316-33788362)
chr2 (239-304)||(4472277-4472342)
chr2 (248-295)||(27740331-27740378)
chr2 (124-294)||(29139642-29139813)
chr2 (235-295)||(2063208-2063269)
chr2 (50-146)||(14405345-14405441)
chr2 (18-277)||(41086513-41086765)
chr2 (174-297)||(29997215-29997337)
chr2 (245-295)||(25504579-25504629)
chr2 (245-295)||(24165867-24165917)
chr2 (251-289)||(29487447-29487485)
chr2 (234-295)||(16952035-16952096)
chr2 (234-295)||(17022700-17022761)
[»] chr5 (32 HSPs)
chr5 (26-294)||(26045655-26045924)
chr5 (56-293)||(13953941-13954178)
chr5 (18-295)||(26405239-26405513)
chr5 (58-297)||(14302133-14302373)
chr5 (20-285)||(8297583-8297851)
chr5 (165-295)||(30097593-30097723)
chr5 (99-295)||(7682747-7682943)
chr5 (64-206)||(7161795-7161935)
chr5 (69-251)||(21398054-21398236)
chr5 (27-295)||(25992129-25992391)
chr5 (172-273)||(7195014-7195114)
chr5 (230-295)||(24071952-24072017)
chr5 (147-295)||(10174923-10175069)
chr5 (133-273)||(33109913-33110050)
chr5 (63-177)||(18593404-18593516)
chr5 (18-116)||(7195112-7195208)
chr5 (65-276)||(7391709-7391917)
chr5 (245-293)||(31742504-31742552)
chr5 (26-296)||(33258579-33258842)
chr5 (182-293)||(31721950-31722058)
chr5 (245-295)||(8731278-8731328)
chr5 (63-165)||(34378259-34378359)
chr5 (149-202)||(5656878-5656931)
chr5 (253-294)||(27713421-27713462)
chr5 (63-154)||(698522-698611)
chr5 (124-206)||(18313425-18313504)
chr5 (208-276)||(37108103-37108170)
chr5 (234-293)||(25657813-25657871)
chr5 (59-177)||(29087637-29087752)
chr5 (181-295)||(5187219-5187332)
chr5 (251-285)||(23426646-23426680)
chr5 (245-285)||(6159827-6159866)
[»] chr8 (30 HSPs)
chr8 (56-295)||(10248256-10248497)
chr8 (18-304)||(12197757-12198036)
chr8 (18-304)||(12442185-12442464)
chr8 (119-290)||(17656432-17656603)
chr8 (128-293)||(8862314-8862481)
chr8 (21-116)||(17656873-17656967)
chr8 (64-250)||(43312375-43312558)
chr8 (31-170)||(31207177-31207315)
chr8 (74-206)||(20138598-20138726)
chr8 (184-293)||(41790961-41791070)
chr8 (63-177)||(41893210-41893322)
chr8 (63-177)||(37986666-37986778)
chr8 (26-168)||(38577606-38577748)
chr8 (50-140)||(15821224-15821313)
chr8 (245-293)||(30235809-30235857)
chr8 (31-168)||(9519627-9519764)
chr8 (248-295)||(17720398-17720444)
chr8 (24-82)||(8862505-8862563)
chr8 (182-228)||(30235889-30235935)
chr8 (26-165)||(35816066-35816201)
chr8 (31-177)||(24995202-24995348)
chr8 (248-295)||(9831694-9831741)
chr8 (150-256)||(22325826-22325931)
chr8 (64-170)||(34388822-34388925)
chr8 (248-293)||(5215000-5215044)
chr8 (63-140)||(12898120-12898195)
chr8 (124-177)||(16457283-16457336)
chr8 (119-206)||(36631039-36631123)
chr8 (235-283)||(5221506-5221553)
chr8 (245-281)||(10552609-10552645)
[»] chr7 (32 HSPs)
chr7 (22-264)||(24324520-24324761)
chr7 (18-285)||(3478465-3478729)
chr7 (18-295)||(6716427-6716705)
chr7 (18-155)||(8745266-8745405)
chr7 (124-295)||(33719185-33719355)
chr7 (31-177)||(47325693-47325838)
chr7 (124-280)||(1321014-1321169)
chr7 (18-144)||(34390077-34390202)
chr7 (63-177)||(31971942-31972054)
chr7 (170-264)||(6492852-6492946)
chr7 (64-177)||(38306423-38306534)
chr7 (64-206)||(3867278-3867415)
chr7 (179-295)||(16828791-16828906)
chr7 (18-230)||(23983320-23983530)
chr7 (127-295)||(42532950-42533117)
chr7 (18-206)||(35745601-35745792)
chr7 (74-206)||(44353345-44353473)
chr7 (64-140)||(6585043-6585118)
chr7 (190-294)||(16954775-16954878)
chr7 (31-177)||(5860096-5860241)
chr7 (250-295)||(28534195-28534240)
chr7 (248-295)||(13312180-13312227)
chr7 (178-237)||(28534277-28534336)
chr7 (244-294)||(36674809-36674859)
chr7 (260-295)||(22567783-22567818)
chr7 (235-301)||(9107481-9107547)
chr7 (239-285)||(26385858-26385903)
chr7 (244-297)||(8745469-8745521)
chr7 (239-295)||(25438691-25438748)
chr7 (20-81)||(42533158-42533219)
chr7 (235-295)||(23983574-23983634)
chr7 (31-170)||(37795117-37795255)
[»] scaffold0050 (1 HSPs)
scaffold0050 (18-295)||(36822-37097)
[»] chr4 (35 HSPs)
chr4 (19-295)||(16832711-16832988)
chr4 (18-283)||(19311069-19311342)
chr4 (18-277)||(41117677-41117935)
chr4 (18-212)||(48098446-48098641)
chr4 (18-293)||(38636927-38637201)
chr4 (34-294)||(49747657-49747917)
chr4 (18-168)||(31050478-31050627)
chr4 (18-293)||(19814910-19815188)
chr4 (26-231)||(25753293-25753500)
chr4 (18-184)||(35341141-35341304)
chr4 (24-183)||(19673219-19673377)
chr4 (125-277)||(39420745-39420896)
chr4 (50-295)||(22810864-22811096)
chr4 (20-116)||(49528187-49528282)
chr4 (19-142)||(2825899-2826020)
chr4 (239-295)||(28967209-28967265)
chr4 (244-297)||(48098645-48098698)
chr4 (18-85)||(39420914-39420981)
chr4 (124-257)||(53823151-53823281)
chr4 (18-92)||(53823314-53823389)
chr4 (63-176)||(8255188-8255299)
chr4 (63-176)||(8268606-8268717)
chr4 (246-295)||(46487621-46487670)
chr4 (249-299)||(35336914-35336964)
chr4 (182-228)||(43373864-43373910)
chr4 (243-295)||(42719494-42719546)
chr4 (66-177)||(8705952-8706061)
chr4 (228-295)||(25754199-25754265)
chr4 (239-293)||(38930122-38930177)
chr4 (249-295)||(35947998-35948044)
chr4 (191-276)||(2061542-2061627)
chr4 (110-183)||(20464796-20464869)
chr4 (253-293)||(19432386-19432426)
chr4 (89-169)||(30964624-30964702)
chr4 (253-293)||(43373784-43373824)
[»] scaffold0063 (1 HSPs)
scaffold0063 (18-295)||(58240-58518)
[»] chr3 (42 HSPs)
chr3 (20-295)||(4170860-4171134)
chr3 (21-295)||(37123497-37123760)
chr3 (25-295)||(50518780-50519047)
chr3 (18-175)||(14879549-14879708)
chr3 (50-168)||(23328167-23328284)
chr3 (18-168)||(45398911-45399060)
chr3 (19-281)||(28937427-28937681)
chr3 (20-168)||(40023389-40023536)
chr3 (63-206)||(43012536-43012677)
chr3 (18-293)||(7104956-7105232)
chr3 (124-279)||(48893060-48893214)
chr3 (124-292)||(14194154-14194317)
chr3 (18-295)||(25647799-25648073)
chr3 (190-295)||(14280240-14280343)
chr3 (63-206)||(53248061-53248200)
chr3 (233-297)||(46358071-46358135)
chr3 (31-177)||(47235826-47235971)
chr3 (239-293)||(14893264-14893318)
chr3 (31-176)||(20611911-20612054)
chr3 (233-293)||(1652569-1652628)
chr3 (126-230)||(25594304-25594406)
chr3 (18-168)||(39021094-39021245)
chr3 (65-188)||(9583852-9583972)
chr3 (63-206)||(19176665-19176806)
chr3 (124-295)||(33143643-33143812)
chr3 (210-275)||(41039463-41039527)
chr3 (63-170)||(2392321-2392426)
chr3 (63-170)||(2394085-2394190)
chr3 (146-278)||(12086483-12086615)
chr3 (63-177)||(30352249-30352359)
chr3 (235-295)||(32010117-32010177)
chr3 (253-295)||(14754974-14755016)
chr3 (185-228)||(1652648-1652691)
chr3 (63-142)||(17551113-17551190)
chr3 (110-177)||(34475564-34475631)
chr3 (18-84)||(14755166-14755232)
chr3 (239-277)||(25594217-25594255)
chr3 (20-176)||(37998971-37999125)
chr3 (170-215)||(32010027-32010072)
chr3 (31-175)||(45163983-45164126)
chr3 (178-230)||(27399218-27399270)
chr3 (239-295)||(37998900-37998956)
[»] chr6 (14 HSPs)
chr6 (18-295)||(20701488-20701771)
chr6 (18-295)||(15120293-15120565)
chr6 (22-177)||(3880404-3880562)
chr6 (233-295)||(17278153-17278215)
chr6 (56-165)||(13423603-13423716)
chr6 (221-295)||(6860348-6860423)
chr6 (20-229)||(32935099-32935305)
chr6 (63-177)||(10541993-10542105)
chr6 (63-170)||(14663238-14663343)
chr6 (182-297)||(26215711-26215826)
chr6 (239-297)||(3880301-3880359)
chr6 (253-293)||(12794465-12794505)
chr6 (234-276)||(20500282-20500323)
chr6 (253-293)||(26534424-26534464)
[»] scaffold1384 (1 HSPs)
scaffold1384 (119-290)||(1347-1522)
[»] scaffold0200 (1 HSPs)
scaffold0200 (18-213)||(19496-19687)
[»] scaffold0119 (1 HSPs)
scaffold0119 (18-213)||(41915-42106)
[»] scaffold1613 (2 HSPs)
scaffold1613 (235-295)||(686-746)
scaffold1613 (102-230)||(790-916)
[»] scaffold0343 (1 HSPs)
scaffold0343 (63-183)||(5867-5985)


Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 21 - 305
Target Start/End: Original strand, 32882489 - 32882767
Alignment:
Q  21 aggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgtt 120  Q
    |||||||| ||||| ||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||    
T  32882489 aggtggtgaaagcttaatgatctttcggtcaggagcttttcgaatgtggctcagctttggtgttgaggactgggg-------ttttgaggggtgttcgtt 32882581  T
Q  121 ggtgg-tgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgag 219  Q
    || || ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  32882582 ggggggtgagtagtgacgatgggtggtgttggatatcgtgtttacagtgctcgttttcgtgaaggagtcagttttaggcggtgatgtatattttggtggg 32882681  T
Q  220 tgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtattttttgattcc 305  Q
    |||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  32882682 tgttgtcctcgggggtgtcttttagggtgtttattttcgggtgttctgcctatatacggcgcctttagtttgtattttctgattcc 32882767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 34774984 - 34775262
Alignment:
Q  18 gagaggtggtggaagctgaatgatc-tttcagctaggagcttttc-gaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgt 115  Q
    ||||||||||||||||||| ||||  |||||| |||||| ||||| | |||||||||||||||||||||||||| ||||||||| | |||| | ||||||    
T  34774984 gagaggtggtggaagctgattgattgtttcagataggagtttttccggatgtggctcagctttggtgttgaggattgggagttt-attttttacgggtgt 34775082  T
Q  116 t-cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttg 214  Q
    | | |||| ||||||||||||||| ||||  ||| |||| |||| ||||||||  ||||||| ||||||||||| |||||||| | ||| || |||||||    
T  34775083 ttcattgg-ggtgagtagtgacgacgggtagtgtgggatttcgtttttacagttgtcgttttcgtgaaggagtctgttttaggtgatgacgtgtattttg 34775181  T
Q  215 gtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    ||| ||||||||||||  ||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34775182 gtgggtgttgtcctcattggtattttttaaggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 34775262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 27102304 - 27102572
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt- 116  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||  |||||||||||||| ||||| |||| ||||| ||  | ||||||||||| ||     
T  27102304 gagaggtggtggaagctgaatgatctttcagataggagcgtttcgt-tgtggctcagctttagtgttcaggaatgggatttggatttttgaggggtattt 27102402  T
Q  117 ---cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatatttt 213  Q
       | |||| ||||||||||||||||| ||| |||||||| |||| |||||||||   ||||| ||||| |  || |||||||| |         |||||    
T  27102403 tttctttgg-ggtgagtagtgacgatgagtggtgttggatttcgtttttacagtggctgttttcgtgaaagtatctgttttagggg---------atttt 27102492  T
Q  214 ggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    |||| ||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  27102493 ggtgggtgttgtcctcat-ggtgt-ttttagggtgtttattttcgggtgttccgcctatatacggcaccttttgtttgtatt 27102572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 295
Target Start/End: Complemental strand, 10785426 - 10785152
Alignment:
Q  20 gaggtggtggaagctgaatgatctt-tcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcg 118  Q
    |||||||||||||||||||||| || || | |||||||||||||  || ||||| |||||||| | |||||||| ||| |||| ||||||||||||||      
T  10785426 gaggtggtggaagctgaatgattttctctgataggagcttttcgggtgcggctctgctttggtatcgaggactgagag-tttatttttgaggggtgtttc 10785328  T
Q  119 ttg-gtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtg 217  Q
    ||| | | |||||||||||||||||||  |||||||||||| ||| |||   ||||||| ||||||||||| |||||| | | | |  | ||||||| ||    
T  10785327 ttgcgggatgagtagtgacgatgggtg--gttggatatcgttttttcagatgtcgttttcgtgaaggagtctgttttaagtgataacatgtattttgatg 10785230  T
Q  218 agtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
     ||||||||||||  ||||| ||||| ||||||||| || |||||||||| || | |||||||  |||||||||||||    
T  10785229 ggtgttgtcctcaagggtgttttttaaggtgtttatatttgggtgttccgactttgtacggcgtttttagtttgtatt 10785152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 66 - 294
Target Start/End: Original strand, 46768343 - 46768566
Alignment:
Q  66 gtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt---cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 162  Q
    |||||| |||||||||||| |||| ||||||||| | | ||||||| | ||   | |||| |||||||||||||||||||   ||||||||||||         
T  46768343 gtggcttagctttggtgttcaggattgggagttt-agtcttgagggttttttttctttgggggtgagtagtgacgatgggcagtgttggatatcg----- 46768436  T
Q  163 acagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtg 262  Q
       ||| ||||||| ||||||||||| |||||||| ||||| ||  ||||||||| ||||||||||| | ||||| ||||||||||||||||||||||||    
T  46768437 ---gtggtcgttttcgtgaaggagtctgttttaggtggtgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtg 46768533  T
Q  263 ttccgcctatatac-ggcgcctttagtttgtat 294  Q
    ||||||||| |||| ||||||||| ||||||||    
T  46768534 ttccgcctacatacgggcgccttttgtttgtat 46768566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 119 - 284
Target Start/End: Original strand, 16148990 - 16149155
Alignment:
Q  119 ttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtga 218  Q
    |||| ||||||||||||||||||||| | ||||||||||| ||| ||||  ||||||   |||||| ||| |||||||| ||||| || |||||| | |     
T  16148990 ttgggggtgagtagtgacgatgggtgcttttggatatcgttttt-cagtagtcgtttacatgaaggtgtctgttttaggtggtgacgtgtattttagcgg 16149088  T
Q  219 g-tgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctt 284  Q
    | | |||||||||  | |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16149089 gcttttgtcctcaaggttgtcttttagggtgtttattttcgcgtgttccgcctatatacggcgcctt 16149155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 126 - 295
Target Start/End: Complemental strand, 32863406 - 32863237
Alignment:
Q  126 tgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgt 225  Q
    ||||| ||||||||| ||| ||   ||||||||||||||| || ||||||| ||| |||| || |||||||||||||| || ||| |||||| |||||||    
T  32863406 tgagttgtgacgatgagtggtgcgagatatcgtgtttacaatggtcgttttcgtggaggattctgttttaggcggtgacgtgtatgttggtgggtgttgt 32863307  T
Q  226 cctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    ||||   ||||| |||   ||||||||||||| ||||||||||||||||||| | | |||||||||||||    
T  32863306 cctcttgggtgtttttcttggtgtttattttcaggtgttccgcctatatacgacacatttagtttgtatt 32863237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 31290987 - 31290740
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtg--- 114  Q
    ||||||||||||||| ||  ||||||||| | ||||||||||||| |||||||||||||||||||||   || || |   |||| |||| |||||||       
T  31290987 gagaggtggtggaagttgcttgatctttcggataggagcttttcggatgtggctcagctttggtgttctaga-tgagccgtttattttttaggggtgttt 31290889  T
Q  115 ttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttg 214  Q
    ||| |||  |||||||||||||||||| ||  ||||| |||| | ||||||||| ||||||| | ||||||||| | |||||| |||||||| || | ||    
T  31290888 ttctttgagggtgagtagtgacgatggatg--gttggctatcatttttacagtggtcgttttcgcgaaggagtctgatttaggtggtgatgtgta-tatg 31290792  T
Q  215 gtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccg 267  Q
      | |  |||||||||| ||||| ||||| |||||||||||||||||||||||    
T  31290791 aagggaattgtcctcaggggtgt-ttttatggtgtttattttcgggtgttccg 31290740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 16577374 - 16577579
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttc 117  Q
    ||||||||||||||||||||||||||||    ||||||||||||| |||||||||| |||||||| ||  |||||  || |||  ||| |||||||||||    
T  16577374 gagaggtggtggaagctgaatgatctttggaataggagcttttcggatgtggctcaactttggtgatggtgactgaaag-tttcttttagaggggtgttc 16577472  T
Q  118 gttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtg 217  Q
     || |  |||||||| |||||||  || |  |||||||| | |||  |||| ||||||| ||||| ||||| |||||||| | |||||| ||||||||||    
T  16577473 ttttggagtgagtagggacgatgaatggttatggatatcattttttgagtggtcgttttcgtgaaagagtctgttttaggtgatgatgtttattttggtg 16577572  T
Q  218 agtgttg 224  Q
     ||||||    
T  16577573 ggtgttg 16577579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 6583184 - 6583117
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttg 85  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||| ||| ||||||||||||||||||    
T  6583184 gagaggtggtggaagctgattgatctttcagataggagcttttcggatgcggctcagctttggtgttg 6583117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 88 - 295
Target Start/End: Complemental strand, 11439919 - 11439711
Alignment:
Q  88 gactgggagttttaattttgaggggtgtt---cgttggtggtg-agtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaag 183  Q
    |||||||||||| |||| |||||||||||   | |||| |||| ||||||||||||  ||| ||||||||||| | ||||| ||| | | ||| ||||||    
T  11439919 gactgggagttt-aattctgaggggtgtttttctttgggggtggagtagtgacgataagtggtgttggatatcatttttacggtggttgctttcgtgaag 11439821  T
Q  184 gagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 283  Q
    |  || |||||||| ||||| || ||||||||||  ||||||| |||| ||  |  |||||||||||||||||||| ||||||| ||||||| | |||||    
T  11439820 ggatctgttttaggtggtgacgtgtattttggtggatgttgtcttcagggggat--tttagggtgtttattttcggatgttccgtctatatatgtcgcct 11439723  T
Q  284 ttagtttgtatt 295  Q
    || |||||||||    
T  11439722 tttgtttgtatt 11439711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 27031806 - 27031687
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttc 117  Q
    ||||||| |||||||||| ||| || ||| | || |||||||||||||||||||||| || | |||||| | ||||||||||| ||||||||||||||||    
T  27031806 gagaggttgtggaagctgcatgttcattcggttaagagcttttcgaatgtggctcagtttggatgttgaagtctgggagtttt-attttgaggggtgttc 27031708  T
Q  118 gttggtggtgagtagtgacgat 139  Q
      ||| ||||||||||||||||    
T  27031707 tctgg-ggtgagtagtgacgat 27031687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 52278430 - 52278509
Alignment:
Q  31 agctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggg 111  Q
    ||||| |||||||||||| |||||| |||||| |||||||||| ||||| |||||||||||||||| ||||||||||||||    
T  52278430 agctgcatgatctttcagataggagtttttcggatgtggctcaactttgatgttgaggactgggag-tttaattttgaggg 52278509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 16147671 - 16147742
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgagga 89  Q
    ||||||||||| ||| ||||||||||||||| || |||||||||| |||||||||||||||||||| |||||    
T  16147671 gagaggtggtgaaagttgaatgatctttcagatatgagcttttcggatgtggctcagctttggtgtagagga 16147742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 177
Target Start/End: Complemental strand, 46692739 - 46692627
Alignment:
Q  63 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 162  Q
    ||||||||||||||| ||||||| || |||| |||||||  ||||  |||||||| |||  ||||||||||||||||||| | || | ||||||||||||    
T  46692739 aatgtggctcagcttgggtgttggggtctggaagtttta--tttggagggtgttctttgtgggtgagtagtgacgatgggcggtggttgatatcgtgttt 46692642  T
Q  163 acagtgctcgttttt 177  Q
    |||||||| ||||||    
T  46692641 acagtgcttgttttt 46692627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 7857800 - 7857893
Alignment:
Q  50 taggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtg 144  Q
    |||||||||||  |||||||||||| || |||||||| | ||||||||||| ||||||||||||||||  ||| ||||||||||| |||||||||    
T  7857800 taggagcttttgaaatgtggctcagtttgggtgttgaagtctgggagtttt-attttgaggggtgttctatgggggtgagtagtggcgatgggtg 7857893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 295
Target Start/End: Complemental strand, 9313087 - 9313031
Alignment:
Q  239 ttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||    
T  9313087 ttttagggtgtttattttcgggtgttccgcctatatacgacgccttttgattgtatt 9313031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 206
Target Start/End: Complemental strand, 46814401 - 46814246
Alignment:
Q  50 taggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgtt 149  Q
    ||||||||||||||||||||||| || | |||||||| |  |||||||||| |||| ||||||||||  |||| ||||||||||||||||||  | |  |    
T  46814401 taggagcttttcgaatgtggctcggcgtgggtgttgaagtatgggagtttt-atttcgaggggtgttatttggaggtgagtagtgacgatggacggttgt 46814303  T
Q  150 ggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgt 206  Q
    |||||  |||||||||| | | |||| ||| |||| ||| || ||||| ||||||||    
T  46814302 ggatactgtgtttacagggtttgtttctgttaaggtgtctgtcttaggtggtgatgt 46814246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 177
Target Start/End: Original strand, 5459289 - 5459434
Alignment:
Q  31 agctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgag 129  Q
    ||||| |||||| ||||| |||| ||| || ||| ||||||||||||| ||||||| || |||| ||||||| |||||| || ||||| |||  ||||||    
T  5459289 agctgcatgatccttcagttaggtgctctttgaaatgtggctcagcttgggtgttggggtctggaagtttta-ttttgatgg-tgttctttgtgggtgag 5459386  T
Q  130 tagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 177  Q
    ||||||||||||| | || |||||| ||||||||||||| | ||||||    
T  5459387 tagtgacgatgggcggtggtggataccgtgtttacagtgattgttttt 5459434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 177
Target Start/End: Complemental strand, 24449850 - 24449738
Alignment:
Q  63 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 162  Q
    |||| |||||||||| ||||||| || || ||||||||| ||||||||| ||||  |||  ||||||||||||||||||| | || |||||| |||||||    
T  24449850 aatgcggctcagcttgggtgttggggtctaggagtttta-ttttgaggg-tgttatttgtgggtgagtagtgacgatgggcggtggtggataccgtgttt 24449753  T
Q  163 acagtgctcgttttt 177  Q
    |||||||| ||||||    
T  24449752 acagtgcttgttttt 24449738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 144
Target Start/End: Original strand, 24659080 - 24659168
Alignment:
Q  54 agcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtg 144  Q
    |||||||||||||||||||||| | || ||| ||  |||||||||||| ||||||||||||||  |||| |||||||||||||||||||||    
T  24659080 agcttttcgaatgtggctcagcctgggagttaagt-ctgggagtttta-ttttgaggggtgttatttgggggtgagtagtgacgatgggtg 24659168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 184 - 293
Target Start/End: Complemental strand, 2987924 - 2987816
Alignment:
Q  184 gagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 283  Q
    |||||||||||||  |||||||| |||||||||| ||||||    ||| ||||| |||   ||||||| ||||||| ||||||||||||||||||||||     
T  2987924 gagtcagttttagtgggtgatgtttattttggtgggtgttgattgcaggggtgtttttgttggtgtttgttttcggatgttccgcctatatacggcgcc- 2987826  T
Q  284 ttagtttgta 293  Q
    ||||||||||    
T  2987825 ttagtttgta 2987816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 64 - 177
Target Start/End: Complemental strand, 5389340 - 5389230
Alignment:
Q  64 atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttta 163  Q
    |||||||||||||| ||||||| || |||||||||||| ||||||||| ||||| |||   |||||||||||||||||| | || |||||| ||||||||    
T  5389340 atgtggctcagcttgggtgttggggtctgggagtttta-ttttgaggg-tgttc-ttgtaagtgagtagtgacgatgggcggtggtggataccgtgttta 5389244  T
Q  164 cagtgctcgttttt 177  Q
    | ||||| ||||||    
T  5389243 cggtgcttgttttt 5389230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 295
Target Start/End: Complemental strand, 376549 - 376497
Alignment:
Q  243 agggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    ||||||||||||||| ||||||| |||||||||||||||||||| ||||||||    
T  376549 agggtgtttattttcaggtgttctgcctatatacggcgcctttactttgtatt 376497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 38544467 - 38544407
Alignment:
Q  235 tgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    ||||||||| |||||||||||||||||||||| | |||||||| || ||||||||||||||    
T  38544467 tgtcttttatggtgtttattttcgggtgttccacatatatacgacgtctttagtttgtatt 38544407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 269
Target Start/End: Complemental strand, 6583055 - 6582968
Alignment:
Q  182 aggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcc 269  Q
    ||||||| |||||||| ||||| || |||||||||| ||||| || |||   |||| ||||| |||||||||||||||||||||||||    
T  6583055 aggagtctgttttaggtggtgacgtgtattttggtgggtgttatcatcatgagtgttttttatggtgtttattttcgggtgttccgcc 6582968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 52278589 - 52278661
Alignment:
Q  210 ttttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctt 284  Q
    |||||||| ||||||||||| | ||||||||| ||| ||||||||||| ||||||||||||||||| ||||||||    
T  52278589 ttttggtgggtgttgtcctc-gtggtgtctttaagg-tgtttattttcaggtgttccgcctatatatggcgcctt 52278661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 41126443 - 41126362
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttt 99  Q
    |||||||| ||||||||||| |||||||  | ||||||||||||  |||||| ||| |||||||| ||||||||| ||||||    
T  41126443 gagaggtgctggaagctgaacgatcttttggataggagcttttcagatgtggatcaactttggtgatgaggactgagagttt 41126362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 9313272 - 9313179
Alignment:
Q  21 aggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt 116  Q
    ||||||||| || || |||||| ||||  || ||| |||||| |||||||||||||||||| || ||||||||||| ||||||||||| |||||||    
T  9313272 aggtggtggcagttgtatgatccttcaaatacgagtttttcggatgtggctcagctttggt-ttcaggactgggag-tttaattttgaagggtgtt 9313179  T

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Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 294
Target Start/End: Original strand, 42374526 - 42374573
Alignment:
Q  247 tgtttattttcgggtgttccgcctatatacggcgcctttagtttgtat 294  Q
    ||||||||||||||||||||||||||||| |||||| || ||||||||    
T  42374526 tgtttattttcgggtgttccgcctatatatggcgccctttgtttgtat 42374573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 295
Target Start/End: Original strand, 46603636 - 46603751
Alignment:
Q  178 gtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgttt-attttcgggtgttccgcctatatac 276  Q
    |||||| |||| |||||||  |||||| | |||||||||| |||||||| |||| |||  |||||| | ||||| |||||||||||||||||||||||||    
T  46603636 gtgaagaagtctgttttagatggtgattt-tattttggtgggtgttgtcttcaggggt--cttttatgatgttttattttcgggtgttccgcctatatac 46603732  T
Q  277 ggcgcctttagtttgtatt 295  Q
      || |||| |||||||||    
T  46603733 aacgtcttttgtttgtatt 46603751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 41126204 - 41126142
Alignment:
Q  233 ggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    |||||||||||   |||||||||||||||||||  ||||||||||  ||||||||||||||||    
T  41126204 ggtgtcttttataatgtttattttcgggtgttctacctatatacgatgcctttagtttgtatt 41126142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 50589014 - 50588964
Alignment:
Q  245 ggtgtttatt-ttcgggtgttccgcctatatacggcgcctttagtttgtat 294  Q
    |||||||||| ||| ||||||||||||||||||||||||||| ||||||||    
T  50589014 ggtgtttattcttcaggtgttccgcctatatacggcgcctttcgtttgtat 50588964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 295
Target Start/End: Original strand, 17033939 - 17033984
Alignment:
Q  250 ttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    ||||||||||||||||||| |||||||| ||||||| |||||||||    
T  17033939 ttattttcgggtgttccgcttatatacgacgccttttgtttgtatt 17033984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 177
Target Start/End: Original strand, 41920619 - 41920730
Alignment:
Q  64 atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttta 163  Q
    |||||||||||||| ||||||| || || |||||||| ||||||| |||||||  |||  |||||||||||||||| || | || || ||| ||||||||    
T  41920619 atgtggctcagcttgggtgttggggtcttggagtttt-attttga-gggtgttttttgtgggtgagtagtgacgataggcggtggtgaataccgtgttta 41920716  T
Q  164 cagtgctcgttttt 177  Q
    || |||| ||||||    
T  41920717 cattgcttgttttt 41920730  T

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Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 37200485 - 37200532
Alignment:
Q  248 gtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    |||||||||||| |||||||||||||||||  | ||||||||||||||    
T  37200485 gtttattttcggatgttccgcctatatacgatgtctttagtttgtatt 37200532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 217
Target Start/End: Complemental strand, 38548934 - 38548845
Alignment:
Q  126 tgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtg 217  Q
    ||||||||||||||||||| |  || ||||||| ||| ||||| ||| ||| ||||| ||||| |||||||| |||||||| ||||||||||    
T  38548934 tgagtagtgacgatgggtggttatgaatatcgt-ttttcagtgatcg-tttcgtgaaagagtctgttttaggtggtgatgtttattttggtg 38548845  T

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Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 38546930 - 38546876
Alignment:
Q  239 ttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgta 293  Q
    ||||| ||| ||||||||||| ||||||||||||||||| | | |||||||||||    
T  38546930 ttttatggtttttattttcggatgttccgcctatatacgacacatttagtttgta 38546876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 285
Target Start/End: Original strand, 19598990 - 19599031
Alignment:
Q  245 ggtgttta-ttttcgggtgttccgcctatatacggcgccttt 285  Q
    |||||||| ||||| |||||||||||||||||||||||||||    
T  19598990 ggtgtttacttttcaggtgttccgcctatatacggcgccttt 19599031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 230
Target Start/End: Complemental strand, 38544637 - 38544511
Alignment:
Q  102 attttgaggggtgtt-cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcgg 200  Q
    |||| |||||||||| |||||| | ||||||||||||||| ||| |  |||||||||| ||| ||||| || ||   ||||| ||||| |||||||| ||    
T  38544637 atttagaggggtgttacgttgg-gatgagtagtgacgatgagtggttatggatatcgt-tttccagtgatcattcc-gtgaaagagtctgttttaggtgg 38544541  T
Q  201 tgatgtatattttggtgagtgttgtcctca 230  Q
    |||||| ||||||||||  |||||||||||    
T  38544540 tgatgtttattttggtgtatgttgtcctca 38544511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 24684350 - 24684310
Alignment:
Q  126 tgagtagtgacgatgggtgatgttggatatcgtgtttacag 166  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  24684350 tgagtagtgacgatgggcggtggtggatatcgtgtttacag 24684310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 27905760 - 27905819
Alignment:
Q  233 ggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgta 293  Q
    ||||||||||| ||||||||||||   ||||||| |||||||||| ||||| |||||||||    
T  27905760 ggtgtcttttatggtgtttatttt-ttgtgttccacctatatacgacgcctctagtttgta 27905819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 6e-65; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 10173545 - 10173270
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttc 117  Q
    ||||||||||||||| ||||||||||||    || |||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||| || |||    
T  10173545 gagaggtggtggaagttgaatgatcttttgaatatgagcttttcggatgtggctcagctttggtgttgaggactgagagttt-aattttgaggagtattc 10173447  T
Q  118 gttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtg 217  Q
     |||| ||||||||||||||||| ||| ||||| ||||||| ||||||||  |||||||  |||||  ||| ||||||||| ||||  | ||||||| ||    
T  10173446 tttgg-ggtgagtagtgacgatgagtggtgttgtatatcgtttttacagtagtcgttttcatgaagacgtctgttttaggccgtgacatgtattttgatg 10173348  T
Q  218 agtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
     || |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||  ||| |||||||||||||    
T  10173347 ggtattgtcctcagaggtatcttttagggtgtttattttcaggtgttccgcctatatacaacgcttttagtttgtatt 10173270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 20 - 295
Target Start/End: Original strand, 7696077 - 7696351
Alignment:
Q  20 gaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgt 119  Q
    ||||||||||||||||||||||||||| | |||||| |||  | |||||||||| |||||||||| |||||  ||||||||| |||| |||||||||  |    
T  7696077 gaggtggtggaagctgaatgatctttcggataggagatttgaggatgtggctcaactttggtgttcaggaccaggagttttattttt-aggggtgttttt 7696175  T
Q  120 t---ggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggt 216  Q
        ||  |||||||||||||||| |||  |||| ||||| | |||||| || ||||||| ||||||||||   ||||||| |||||||| |||||||||    
T  7696176 ctaagggagtgagtagtgacgatgagtg--gttgaatatcatttttacattggtcgttttcgtgaaggagtttattttaggtggtgatgtgtattttggt 7696273  T
Q  217 gagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    | ||||||||||| | ||||| ||||| |||||||||||| |||||||||||||||||||||  ||||| |||||||||    
T  7696274 gggtgttgtcctcgggggtgt-ttttaaggtgtttatttttgggtgttccgcctatatacggttccttttgtttgtatt 7696351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 37770610 - 37770359
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgagggg---tg 114  Q
    |||||||| |||||||||||||||||||||| || |||||||||  | ||||||| ||||||||||| ||| ||| ||| |||||||||||||||   |     
T  37770610 gagaggtgttggaagctgaatgatctttcagatatgagcttttctgaggtggctcggctttggtgttcaggtctgtgag-tttaattttgagggggtttt 37770512  T
Q  115 ttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttg 214  Q
    ||| |||| || |||||||||||| ||||| |||||||        ||| |||| | ||||| ||||||||||| |||||||| ||||| ||  ||||||    
T  37770511 ttctttgggggcgagtagtgacgacgggtggtgttgga--------ttatagtggtggttttcgtgaaggagtctgttttaggtggtgacgtggattttg 37770420  T
Q  215 gtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacg 277  Q
    ||| ||| | ||||||  ||||| |||||||||||||||||||||||||||||||||||||||    
T  37770419 gtgggtggtatcctca-tggtgt-ttttagggtgtttattttcgggtgttccgcctatatacg 37770359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 16952350 - 16952154
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttc 117  Q
    ||||||||||||||||| || |||||||| | ||||||||||||| |||||| ||| |||||||||||||||||||||| ||| |||| |||||||||||    
T  16952350 gagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgaggactgggag-tttcatttagaggggtgttc 16952252  T
Q  118 gttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagt-gctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttg 214  Q
     |||| ||||||||||||||||| ||| || || ||||| | ||| |||| | | ||||| ||||||| ||| |||||| | |||||||| |||||||    
T  16952251 tttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgtctgttttaagtggtgatgtttattttg 16952154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 17023015 - 17022819
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttc 117  Q
    ||||||||||||||||| || |||||||| | ||||||||||||| |||||| ||| |||||||||||||||||||||| ||| |||| |||||||||||    
T  17023015 gagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgaggactgggag-tttcatttagaggggtgttc 17022917  T
Q  118 gttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagt-gctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttg 214  Q
     |||| ||||||||||||||||| ||| || || ||||| | ||| |||| | | ||||| ||||||| ||| |||||| | |||||||| |||||||    
T  17022916 tttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgtctgttttaagtggtgatgtttattttg 17022819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 17060321 - 17060125
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttc 117  Q
    ||||||||||||||||| || |||||||| | ||||||||||||| |||||| ||| |||||||||||||||||||||| ||| |||| |||||||||||    
T  17060321 gagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgaggactgggag-tttcatttagaggggtgttc 17060223  T
Q  118 gttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagt-gctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttg 214  Q
     |||| ||||||||||||||||| ||| || || ||||| | ||| |||| | | ||||| ||||||| ||| |||||| | |||||||| |||||||    
T  17060222 tttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgtctgttttaagtggtgatgtttattttg 17060125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 34230314 - 34230591
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt- 116  Q
    ||||||||||||||||||||||||||||||  || |||||||||  |||||||||| |||||||||| |||||||  | ||||  |||| | |||||||     
T  34230314 gagaggtggtggaagctgaatgatctttcaaataagagcttttcagatgtggctcaactttggtgtttaggactg--aatttttttttttatgggtgttt 34230411  T
Q  117 ---cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatatttt 213  Q
       | |||| ||||||||||  ||| ||||| ||||||||||||| |||| |||| ||||||| ||| | ||||| |||| ||  ||||| || ||||||    
T  34230412 tttctttggaggtgagtagttgcgacgggtgttgttggatatcgtttttatagtggtcgttttcgtggaagagtctgttt-agatggtgacgtgtatttt 34230510  T
Q  214 ggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    ||||  |||||| || || ||||| ||||| | ||||||||||  |||||||||||||||||||||| |||| |||||||||    
T  34230511 ggtggatgttgttctaaggggtgt-ttttacgatgtttattttttggtgttccgcctatatacggcgtcttttgtttgtatt 34230591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 150 - 295
Target Start/End: Original strand, 4974990 - 4975135
Alignment:
Q  150 ggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgt 249  Q
    ||||||||| ||||||||| ||||||| |||||| |||| |||||||| |||| ||| || ||||||| ||||| ||||||  | ||| ||| |||||||    
T  4974990 ggatatcgtttttacagtggtcgttttcgtgaagaagtctgttttaggtggtggtgtgtaatttggtgggtgttatcctcaaggatgtttttcagggtgt 4975089  T
Q  250 ttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||    
T  4975090 ttattttcgggtgttcagcctatatacgacgcctttagtttgtatt 4975135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 150 - 295
Target Start/End: Original strand, 4992898 - 4993043
Alignment:
Q  150 ggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgt 249  Q
    ||||||||| ||||||||| ||||||| |||||| |||| |||||||| |||| ||| || ||||||| ||||| ||||||  | ||| ||| |||||||    
T  4992898 ggatatcgtttttacagtggtcgttttcgtgaagaagtctgttttaggtggtggtgtgtaatttggtgggtgttatcctcaaggatgtttttcagggtgt 4992997  T
Q  250 ttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||    
T  4992998 ttattttcgggtgttcagcctatatacgacgcctttagtttgtatt 4993043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 77 - 295
Target Start/End: Original strand, 12342992 - 12343195
Alignment:
Q  77 ttggtgttgaggactgggagttttaattttgaggggtgttcgttggtgg-tgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttt 175  Q
    ||||||||||||||||||||||| | ||||||||||||||  |||| || ||||||||||||||| |||  |||||||||||| ||||||| | ||||||    
T  12342992 ttggtgttgaggactgggagttt-atttttgaggggtgtttcttggggggtgagtagtgacgatgagtg--gttggatatcgtttttacagaggtcgttt 12343088  T
Q  176 ttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatata 275  Q
    | ||||||||||| |||||||| ||||| || ||||||| ||  ||||||||||||             |||||||||||||||||||||||||| | ||    
T  12343089 tcgtgaaggagtctgttttaggtggtgacgtgtattttgatggatgttgtcctcag-------------ggtgtttattttcgggtgttccgcctttgta 12343175  T
Q  276 cggcgcctttagtttgtatt 295  Q
     | || ||||||||||||||    
T  12343176 agacgtctttagtttgtatt 12343195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 66 - 206
Target Start/End: Original strand, 387338 - 387476
Alignment:
Q  66 gtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttaca 165  Q
    |||||||||||| ||||||| || |||||||||||| ||||||||| ||||| |||| ||||| ||||||||||||| | || || || | |||||||||    
T  387338 gtggctcagcttgggtgttggggtctgggagtttta-ttttgaggg-tgttctttgggggtgaatagtgacgatgggcggtggtgaattttgtgtttaca 387435  T
Q  166 gtgctcgtttttgtgaaggagtcagttttaggcggtgatgt 206  Q
     |||| ||||||||||||||||| |||||||| ||||||||    
T  387436 atgcttgtttttgtgaaggagtctgttttaggtggtgatgt 387476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 14106488 - 14106305
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttc 117  Q
    ||||||| ||||||| || |||||| ||| | || ||||||| ||||||||||||||||| |||||||| | ||| ||||||| ||||||||||||||||    
T  14106488 gagaggttgtggaagttgtatgatcattcggttaagagctttacgaatgtggctcagcttgggtgttgaagtctgagagtttt-attttgaggggtgttc 14106390  T
Q  118 gttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtg 202  Q
     |||| ||||||||||||||||| ||| |  ||||||  ||||||||| || | |||| ||| |||| ||| || ||||| ||||    
T  14106389 tttgggggtgagtagtgacgatgagtggttgtggatactgtgtttacaatgtttgtttctgttaaggtgtccgtcttaggtggtg 14106305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 63 - 202
Target Start/End: Original strand, 7460836 - 7460974
Alignment:
Q  63 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 162  Q
    ||||||||||||||| |||||||| | |||||||||||| ||||||||||||||| |||| | ||||||||||||||| ||| |  ||||||| ||||||    
T  7460836 aatgtggctcagcttgggtgttgaagtctgggagtttta-ttttgaggggtgttctttggggttgagtagtgacgatgtgtggttgtggatattgtgttt 7460934  T
Q  163 acagtgctcgtttttgtgaaggagtcagttttaggcggtg 202  Q
    |||||| | |||| ||| |||| ||| || ||||||||||    
T  7460935 acagtgtttgtttctgttaaggtgtccgtcttaggcggtg 7460974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 197
Target Start/End: Original strand, 7874438 - 7874583
Alignment:
Q  50 taggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgtt 149  Q
    |||||||||||||||||||||||||||| |||||||| | || |||||||| |||||||||| ||||| |||| ||||||||||||||||||||| |  |    
T  7874438 taggagcttttcgaatgtggctcagcttgggtgttgaagtcttggagtttt-attttgagggatgttctttgg-ggtgagtagtgacgatgggtggttgt 7874535  T
Q  150 ggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttagg 197  Q
    |||||  |||||||||||| | |||| ||| |||| ||| || |||||    
T  7874536 ggatactgtgtttacagtgtttgtttctgtcaaggtgtccgtcttagg 7874583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 5254371 - 5254553
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttc 117  Q
    ||||||| |||||||||| ||| || ||| | | ||||||||||||||||||||||| || |||||||| | ||| |||||    |||||||||||||||    
T  5254371 gagaggttgtggaagctgcatgttcattcggtttggagcttttcgaatgtggctcagtttgggtgttgaagtctgagagtt----ttttgaggggtgttc 5254466  T
Q  118 gttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgt 206  Q
     |||  ||||||||||||||||||||| |  ||||||  |||||||||||| | |||| ||| |||| ||| || ||||| ||||||||    
T  5254467 tttg--ggtgagtagtgacgatgggtggttgtggatactgtgtttacagtgtttgtttctgttaaggtgtccgtcttaggtggtgatgt 5254553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 31 - 177
Target Start/End: Complemental strand, 39338818 - 39338674
Alignment:
Q  31 agctgaatgatctttcagctaggagcttttcgaat-gtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgag 129  Q
    |||||||||||| ||| | |||| ||| ||||||| ||| |||||||| |||||||||| |||||||||||| ||||||||| ||||| |||  ||||||    
T  39338818 agctgaatgatccttcggttaggtgctcttcgaattgtgactcagcttgggtgttgaggtctgggagtttta-ttttgaggg-tgttctttgtgggtgag 39338721  T
Q  130 tagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 177  Q
    ||||||||||||| |||| |||||| | ||||||||||||| ||||||    
T  39338720 tagtgacgatgggcgatggtggata-cttgtttacagtgcttgttttt 39338674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 1269596 - 1269787
Alignment:
Q  18 gagaggtggtggaagctgaatgatcttt-cagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt 116  Q
    ||||| ||||||||||||||| |||||| | | ||||||||||||||||||||||| |||||||||||||||| |  ||  |||| |||| | |||| ||    
T  1269596 gagagttggtggaagctgaataatcttttcggataggagcttttcgaatgtggctctgctttggtgttgaggatt--gaagtttatttttaaagggtatt 1269693  T
Q  117 cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatatttt 213  Q
      |||| || ||||||||||||||||||  |||||||||||| |||| || | ||||||  | |||||| |  |||||||| |||||||| ||||||    
T  1269694 tcttgg-ggcgagtagtgacgatgggtg--gttggatatcgtttttatagaggtcgtttccgagaaggaatttgttttaggtggtgatgtgtatttt 1269787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 219 - 295
Target Start/End: Original strand, 13337565 - 13337640
Alignment:
Q  219 gtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    ||||||||||||| ||||| ||||||||||||||||||| |||||||| |||||||||| ||||||| |||||||||    
T  13337565 gtgttgtcctcaggggtgt-ttttagggtgtttattttcaggtgttccacctatatacgacgccttttgtttgtatt 13337640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 170
Target Start/End: Complemental strand, 17116800 - 17116694
Alignment:
Q  63 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 162  Q
    ||||||||||||||| ||||||| || ||| ||||||| |||||||||| ||||| |||  |||||||| |||||||||| | || |||||| |||||||    
T  17116800 aatgtggctcagcttgggtgttggggtctgagagtttttattttgaggg-tgttctttgtgggtgagtaatgacgatgggcggtggtggataccgtgttt 17116702  T
Q  163 acagtgct 170  Q
    ||||||||    
T  17116701 acagtgct 17116694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 177
Target Start/End: Original strand, 10524228 - 10524373
Alignment:
Q  31 agctgaatgatctttcagctaggagcttttcga-atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgag 129  Q
    ||||| |||||| ||| | |||| ||| ||||| |||||||||||||| ||||||| ||  |||||||||||  ||||  |||||||| |||  ||||||    
T  10524228 agctgcatgatccttcggttaggtgctcttcgatatgtggctcagcttgggtgttggggtttgggagtttta--tttggagggtgttctttgtgggtgag 10524325  T
Q  130 tagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 177  Q
    ||||||||||||| | || |||||| ||||||||| ||||| ||||||    
T  10524326 tagtgacgatgggcggtggtggataccgtgtttacggtgcttgttttt 10524373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 295
Target Start/End: Complemental strand, 41113590 - 41113431
Alignment:
Q  133 tgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcaga 232  Q
    |||||||| ||| ||| ||||||||| | |||| |  ||||||| ||||||||||| ||||||||  || | || |||||||||| |||    |||||      
T  41113590 tgacgatgagtgctgtgggatatcgtttgtacaatagtcgttttcgtgaaggagtctgttttaggtagtaacgtttattttggtgggtgc---cctcatg 41113494  T
Q  233 ggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||||   | ||||||||||||||    
T  41113493 ggtgttttttagggtatttattttcggatgttccgcctatatacaatgtctttagtttgtatt 41113431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 22884852 - 22884805
Alignment:
Q  248 gtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  22884852 gtttattttcgggtgttccgcctatatacgacgcctttagtttgtatt 22884805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 295
Target Start/End: Complemental strand, 33788362 - 33788316
Alignment:
Q  249 tttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  33788362 tttattttcgggtgttccgcatatatacggcgcctttagtttgtatt 33788316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 4472277 - 4472342
Alignment:
Q  239 ttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtattttttgattc 304  Q
    ||||| ||||||||||||||| ||||||| ||||||||| ||||||||||||||||| | ||||||    
T  4472277 ttttatggtgtttattttcggatgttccgtctatatacgacgcctttagtttgtattctctgattc 4472342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 27740331 - 27740378
Alignment:
Q  248 gtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||    
T  27740331 gtttattttcgggtgttccacctatatacgacgcctttagtttgtatt 27740378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 294
Target Start/End: Complemental strand, 29139813 - 29139642
Alignment:
Q  124 ggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttagg---cggtgatgtatattttggtgagt 220  Q
    ||||||||||||| |  |||||||||| ||||||| |||  |||| | ||||||||||| |||||  |||||||   |||||| || ||||||||||  |    
T  29139813 ggtgagtagtgacaactggtgatgttgaatatcgt-tttttagtggttgtttttgtgaaagagtctcttttaggtgacggtgacgtgtattttggtggat 29139715  T
Q  221 gttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtat 294  Q
    |||||  |||||||||| ||||| ||| |||||||||| ||||||| |  ||||||| |||||||  |||||||    
T  29139714 gttgttttcagaggtgt-ttttaaggtatttattttcgagtgttccactaatatacgacgccttttatttgtat 29139642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 2063208 - 2063269
Alignment:
Q  235 tgtcttttagggtgtttatttt-cgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    ||||||||| |||||||||||| |||||||| |||||||||||||| ||||| |||||||||    
T  2063208 tgtcttttatggtgtttatttttcgggtgtttcgcctatatacggcacctttcgtttgtatt 2063269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 146
Target Start/End: Original strand, 14405345 - 14405441
Alignment:
Q  50 taggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttc-gttggtggtgagtagtgacgatgggtgat 146  Q
    ||||||||| ||| |||||||||  ||| |||||||| | ||||||||||| |||||||||| |||||  |||| ||||||||||||| |||||||||    
T  14405345 taggagcttgtcgcatgtggctcgacttgggtgttgaagtctgggagtttt-attttgagggatgttcttttgggggtgagtagtgacaatgggtgat 14405441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 41086765 - 41086513
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttg-aggactgggagttttaattttgaggggtgtt 116  Q
    ||||||||||||||||||||||||||||| | || |||||||| | ||||| |||  |||||| |||  |||| || |||||| | ||||||||||||||    
T  41086765 gagaggtggtggaagctgaatgatctttcggataagagctttttggatgtgactctactttggagtttcaggattgcgagtttga-ttttgaggggtgtt 41086667  T
Q  117 cgtt--------ggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtat 208  Q
      ||        ||||  |||||||||||||||||| | ||||||||||| |||| |||| ||| ||| || |||| ||| |||||||| ||||| ||      
T  41086666 ttttctttggggggtgaggagtagtgacgatgggtggtattggatatcgtttttagagtggtcgctttcgttaaggggtctgttttaggtggtgacgt-- 41086569  T
Q  209 attttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacg 277  Q
                |||||| |||| ||||| ||||||||| |||||||||||||||| ||||||||||||    
T  41086568 ------------gttgtcttcaggggtgt-ttttagggtatttattttcgggtgtttcgcctatatacg 41086513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 297
Target Start/End: Original strand, 29997215 - 29997337
Alignment:
Q  174 ttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctata 273  Q
    |||| ||||||| || |||||||  ||||| ||||||||| ||  | || |||||||| | ||  ||||||| ||||||||||||| |||||||| ||||    
T  29997215 ttttatgaaggaatctgttttagatggtgacgtatattttagtaggagtggtcctcagggatga-ttttaggatgtttattttcggatgttccgcttata 29997313  T
Q  274 tacggcgcctttagtttgtatttt 297  Q
    ||||| |||||| |||| ||||||    
T  29997314 tacggtgccttttgtttttatttt 29997337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 295
Target Start/End: Complemental strand, 25504629 - 25504579
Alignment:
Q  245 ggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    |||||||||||| ||||||| || ||||||||||||||||| |||||||||    
T  25504629 ggtgtttatttttgggtgtttcgtctatatacggcgccttttgtttgtatt 25504579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 295
Target Start/End: Complemental strand, 24165917 - 24165867
Alignment:
Q  245 ggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    ||||||| |||||||||||||||||||||||| | | ||||||| ||||||    
T  24165917 ggtgtttgttttcgggtgttccgcctatatacagtgtctttagtctgtatt 24165867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 289
Target Start/End: Original strand, 29487447 - 29487485
Alignment:
Q  251 tattttcgggtgttccgcctatatacggcgcctttagtt 289  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  29487447 tattttcaggtgttccgcctatatacggctcctttagtt 29487485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 16952096 - 16952035
Alignment:
Q  234 gtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    |||||||||| | |||||||||| || ||||| ||||||||||| || || |||||||||||    
T  16952096 gtgtcttttatgatgtttatttttggatgttctgcctatatacgacgtctatagtttgtatt 16952035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 17022761 - 17022700
Alignment:
Q  234 gtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    |||||||||| | |||||||||| || ||||| ||||||||||| || || |||||||||||    
T  17022761 gtgtcttttatgatgtttatttttggatgttctgcctatatacgacgtctatagtttgtatt 17022700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 5e-53; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 26 - 294
Target Start/End: Complemental strand, 26045924 - 26045655
Alignment:
Q  26 gtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt---cgttgg 122  Q
    ||||||||||| ||||||||||| || |||||||||| | ||| |||| |||||||||| |||| || |||||| ||||||||||||||||   | ||||    
T  26045924 gtggaagctgattgatctttcagatatgagcttttcggaggtgactcaactttggtgtttaggattgagagttt-aattttgaggggtgtttttctttgg 26045826  T
Q  123 tggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgt 222  Q
     ||||||||||||||||||| | |||||||| |||| ||||| ||| || ||||  ||||| |||| |||||||| ||||| ||  ||||||||| ||||    
T  26045825 -ggtgagtagtgacgatgggaggtgttggatttcgtttttaccgtggtcattttcatgaagaagtctgttttaggtggtgacgtgaattttggtgggtgt 26045727  T
Q  223 tgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtat 294  Q
    ||||||||| || || |||||||||||||||||| || ||||||| ||||||||||||||||| ||||||||    
T  26045726 tgtcctcaggggcgttttttagggtgtttatttttggatgttccgtctatatacggcgccttttgtttgtat 26045655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 56 - 293
Target Start/End: Complemental strand, 13954178 - 13953941
Alignment:
Q  56 cttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt-cgttggtggtgagtagtgacgatgggtgatgttggata 154  Q
    ||||||| ||||||||||||||||| |||||||||||||||||| ||||| |||||||||| |||||| || |||| ||||||||||||||||| |||||    
T  13954178 cttttcggatgtggctcagctttggcgttgaggactgggagttt-aatttagaggggtgtttcgttgggggagagttgtgacgatgggtgatgtgggata 13954080  T
Q  155 tcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttatt 254  Q
    | || ||||||||  |||| ||  ||||  |||| |||||||| | |||  | |||||||||| | ||||||||||  ||| | ||||| ||||||||||    
T  13954079 ttgtttttacagtagtcgtcttcatgaaaaagtctgttttaggagatgacatgtattttggtgggagttgtcctcaagggtattttttaaggtgtttatt 13953980  T
Q  255 ttcgggtgttccgcctatatacggcgcctttagtttgta 293  Q
    ||| |||||||||||||||||||||||||||||||||||    
T  13953979 ttcaggtgttccgcctatatacggcgcctttagtttgta 13953941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 26405513 - 26405239
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttc 117  Q
    ||||||||||||||||||| || |||||| | || |||||||||| | |||||||  |||||||||| |||||  ||||||| |||||||| | |||||     
T  26405513 gagaggtggtggaagctgattggtctttcggatatgagcttttcggaggtggctcgactttggtgttcaggacgaggagttt-aattttgatgagtgttt 26405415  T
Q  118 gt--tggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttgg 215  Q
     |  | | |||||||||||||||||||||||  ||||||| || || |||||| || |||   ||||| |||| |||||||| ||||| || ||||||||    
T  26405414 ttctttgaggtgagtagtgacgatgggtgat--tggatatggttttaacagtg-tcatttccatgaagaagtctgttttaggtggtgacgtgtattttgg 26405318  T
Q  216 tgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    ||  |||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||| ||||||| |||||||||    
T  26405317 tggttgttgtcctcaggggtgt-ttttaaggtgtttattttcgggtgttccgactatatacgacgccttttgtttgtatt 26405239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 58 - 297
Target Start/End: Complemental strand, 14302373 - 14302133
Alignment:
Q  58 tttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt---cgttggtggtgagtagtgacgatgggtgatgttggata 154  Q
    ||||| || |||||||||||||||||| |||| ||||||||| ||||||||||||| ||   | |||| | |||||||||||||  |||| |||||||||    
T  14302373 tttcggatatggctcagctttggtgttcaggagtgggagttt-aattttgaggggtatttttctttggggatgagtagtgacgacaggtggtgttggata 14302275  T
Q  155 tcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttatt 254  Q
    |||| |||||| || ||||||| | |||||| || |||||||| ||||| || |||||||||| |||||||| |||| ||||| ||||||| | ||||||    
T  14302274 tcgtttttacattggtcgttttcgcgaaggaatctgttttaggtggtgacgtgtattttggtgggtgttgtcatcaggggtgt-ttttaggatttttatt 14302176  T
Q  255 ttcgggtgttccgcctatatacggcgcctttagtttgtatttt 297  Q
    || |||||||||  |||||||||||| || | |||| ||||||    
T  14302175 tttgggtgttccttctatatacggcgtctcttgtttatatttt 14302133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 20 - 285
Target Start/End: Original strand, 8297583 - 8297851
Alignment:
Q  20 gaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt--- 116  Q
    ||||||||||||| |||||| |||||| | ||||||||||||| ||||||||| | ||||||||| | ||  |||||||| ||||||||||||||||       
T  8297583 gaggtggtggaagttgaatggtctttcggataggagcttttcggatgtggctcggttttggtgttcatgatggggagttt-aattttgaggggtgttttt 8297681  T
Q  117 cgttggtggtgagt----agtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattt 212  Q
    | |||| |||||||    ||||||||| ||||  |||||| ||||| |||||| || || ||||  |||||||||  |||||||| |||||||| |||||    
T  8297682 ctttgggggtgagtgagtagtgacgataggtg--gttggaaatcgtttttacattggtctttttcttgaaggagtgtgttttaggtggtgatgtgtattt 8297779  T
Q  213 tggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgccttt 285  Q
    |||||  |||| ||||||| ||||| ||||||||||| ||||||| |||||||||||||| |||  |||||||    
T  8297780 tggtggatgttatcctcaggggtgt-ttttagggtgtgtattttcaggtgttccgcctatgtacaacgccttt 8297851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 165 - 295
Target Start/End: Original strand, 30097593 - 30097723
Alignment:
Q  165 agtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgtt 264  Q
    |||||| ||||| ||||||||||| |||||||| ||||| || |||||||||| |||||||| |||  | ||| ||||||||||||||||||||||||||    
T  30097593 agtgcttgttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtgttgtcatcatggatgttttttagggtgtttattttcgggtgtt 30097692  T
Q  265 ccgcctatatacggcgcctttagtttgtatt 295  Q
    |||||||||||||||| ||||||||||||||    
T  30097693 ccgcctatatacggcgtctttagtttgtatt 30097723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 99 - 295
Target Start/End: Original strand, 7682747 - 7682943
Alignment:
Q  99 ttaattttgaggggtgtt-cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttagg 197  Q
    |||||||||||||||||| | |||| | |||||||||||||||| || ||   ||||  || ||||| ||| ||||||||||||| |||||  |||||||    
T  7682747 ttaattttgaggggtgtttcattggggttgagtagtgacgatggatggtgcgagataaagtttttacggtggtcgtttttgtgaaagagtctattttagg 7682846  T
Q  198 cggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
     |||||||| |||||||||| ||||||| |||| | || | |||| ||||| |||||||||| ||||||||||||||||| |||||||| ||||||||    
T  7682847 tggtgatgtgtattttggtgggtgttgttctcataagtatttttt-gggtgcttattttcggatgttccgcctatatacgacgcctttaatttgtatt 7682943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 64 - 206
Target Start/End: Complemental strand, 7161935 - 7161795
Alignment:
Q  64 atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttta 163  Q
    ||||||||||||||  |||||| || |||||||||||| |||||| || ||||| |||| |||||||||||||| |||||| || |||| ||||||||||    
T  7161935 atgtggctcagcttgtgtgttggggtctgggagtttta-ttttgatgg-tgttctttgggggtgagtagtgacgttgggtggtggtggaaatcgtgttta 7161838  T
Q  164 cagtgctcgtttttgtgaaggagtcagttttaggcggtgatgt 206  Q
    ||||||| ||||||||||||||||| ||||||||  |||||||    
T  7161837 cagtgcttgtttttgtgaaggagtctgttttaggtagtgatgt 7161795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 69 - 251
Target Start/End: Complemental strand, 21398236 - 21398054
Alignment:
Q  69 gctcagctttggtgttgaggactgggagttttaattttgaggggtgtt-cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagt 167  Q
    ||||| ||||||||||||||||| ||||||| | ||| ||||| |||| |||||| |||||||| ||| |||||||| ||  ||||||||| ||||||      
T  21398236 gctcaactttggtgttgaggactaggagttt-attttagagggttgtttcgttgggggtgagtactgatgatgggtggtgcgggatatcgtttttacaaa 21398138  T
Q  168 gctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgttt 251  Q
    | | ||||| ||||||| ||| |||||||  ||||| || |||||| || |||||||||||||| ||||| ||||| |||||||    
T  21398137 ggttgttttcgtgaaggcgtctgttttagatggtgacgtgtatttttgtaagtgttgtcctcaggggtgttttttaaggtgttt 21398054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 295
Target Start/End: Original strand, 25992129 - 25992391
Alignment:
Q  27 tggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt----cgttgg 122  Q
    |||||||| ||||||||||| |  || ||||||| | | ||||||| ||||||||||| |||||| |||||||   ||||||||||| ||    | ||||    
T  25992129 tggaagcttaatgatctttcggggagaagctttttgtaggtggctctgctttggtgttcaggactaggagtttg--ttttgaggggtattttttctttgg 25992226  T
Q  123 tggtgag--tagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagt 220  Q
     || |||  ||||| ||||||||| | ||||||||||| ||||||||| | | ||| ||||||| ||| |||||||| ||        ||||||||| ||    
T  25992227 gggcgagagtagtggcgatgggtggtattggatatcgtttttacagtggttgctttcgtgaaggggtctgttttaggtgg--------attttggtgggt 25992318  T
Q  221 gttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    |||||| |  | ||||| |||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||    
T  25992319 gttgtcattgg-ggtgt-ttttagggtgtttattgtcgggtgttccgcatatatacggcgccttttgtttgtatt 25992391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 172 - 273
Target Start/End: Complemental strand, 7195114 - 7195014
Alignment:
Q  172 gtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgccta 271  Q
    ||||||||||||||||| |||||||| ||||| || |||||||||| ||||||||| ||| ||||| |||||||||||||||||| || |||||||| ||    
T  7195114 gtttttgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtgttgtccgcagcggtgt-ttttagggtgtttatttttggatgttccgcata 7195016  T
Q  272 ta 273  Q
    ||    
T  7195015 ta 7195014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 230 - 295
Target Start/End: Complemental strand, 24072017 - 24071952
Alignment:
Q  230 agaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24072017 agaggtgtcttttatgatgtttattttcgggtgttccgcctatatacggcgcccttagtttgtatt 24071952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 295
Target Start/End: Original strand, 10174923 - 10175069
Alignment:
Q  147 gttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttaggg 246  Q
    |||||||||||| ||||| ||| ||||||||  ||||||||| |||||||| ||| | || || ||||||| ||||||||||| ||||||| |||||||     
T  10174923 gttggatatcgtttttaccgtggtcgttttttagaaggagtctgttttaggtggttacgtgtactttggtgggtgttgtcctcggaggtgt-ttttagga 10175021  T
Q  247 tgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    |||||| |||| ||||||  |||||||||||  |||||| |||||||||    
T  10175022 tgttta-tttcaggtgttttgcctatatacgatgccttttgtttgtatt 10175069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 273
Target Start/End: Complemental strand, 33110050 - 33109913
Alignment:
Q  133 tgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcaga 232  Q
    |||||||||||| | ||||||||||| ||||||||| ||||||| ||||||| ||  |||||||| | ||| || |||||||||| |||||||| | ||     
T  33110050 tgacgatgggtggtattggatatcgtttttacagtggtcgttttcgtgaaggggtttgttttaggtgatgacgtgtattttggtgggtgttgtcat-ag- 33109953  T
Q  233 ggtgtcttttagggtgtttattttcgggtgttccgcctata 273  Q
    ||||| |||||  ||||||||||||||||||| || |||||    
T  33109952 ggtgt-ttttaaagtgtttattttcgggtgtttcggctata 33109913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 63 - 177
Target Start/End: Original strand, 18593404 - 18593516
Alignment:
Q  63 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 162  Q
    ||||||||||| ||| ||||||| || ||||||||||||  ||||  || ||||| |||  ||||||||||||||||||| | || |||||| |||||||    
T  18593404 aatgtggctcaacttgggtgttggggtctgggagtttta--tttggaggatgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgttt 18593501  T
Q  163 acagtgctcgttttt 177  Q
    |||||||| ||||||    
T  18593502 acagtgcttgttttt 18593516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 7195208 - 7195112
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt 116  Q
    ||||||| ||||||||||||| ||||||  | |||||||||| || |||||||||||||||||| || |||||| |||||||| |||||||||| ||||    
T  7195208 gagaggtcgtggaagctgaataatcttttggataggagctttgcggatgtggctcagctttggtattcaggact-ggagtttt-attttgagggttgtt 7195112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 65 - 276
Target Start/End: Complemental strand, 7391917 - 7391709
Alignment:
Q  65 tgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt-cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttta 163  Q
    |||||||| ||||| |||||||||| |||||| ||  ||||||||||||||| | |||| |||||||||||||||  ||   ||  |||| |||| ||||    
T  7391917 tgtggctctgctttcgtgttgaggaatgggagatt--attttgaggggtgtttctttgggggtgagtagtgacgacaggctgtgcgggatttcgttttta 7391820  T
Q  164 cagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgt 263  Q
    ||||| || |||  ||| |||| ||| ||||||| |||||  | ||||||| || ||||||||||||  ||||| ||||||| ||| || |||| ||| |    
T  7391819 cagtggtcttttccgtggaggaatcaattttaggtggtgacatgtattttgatg-gtgttgtcctcatgggtgt-ttttaggttgtgtactttcaggttt 7391722  T
Q  264 tccgcctatatac 276  Q
    |||||||||||||    
T  7391721 tccgcctatatac 7391709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 31742504 - 31742552
Alignment:
Q  245 ggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgta 293  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  31742504 ggtgtttgttttcgggtgttccgcctatatacggcgccttttgtttgta 31742552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 296
Target Start/End: Complemental strand, 33258842 - 33258579
Alignment:
Q  26 gtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt----cgttg 121  Q
    |||||||||||||||| | ||||  |||||||| | | ||||||||||||||||||||| ||| || |||||||   ||||| ||||||||    | ||     
T  33258842 gtggaagctgaatgatttctcagggaggagcttgttggatgtggctcagctttggtgttcaggtctaggagtttgt-ttttgtggggtgttttttcttta 33258744  T
Q  122 gtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtg 221  Q
    | ||||||||||| |||||| || | ||||||||||| ||||||||| ||| ||| ||||||   || |||||||| ||        |||||| || |||    
T  33258743 ggggtgagtagtggcgatggatggtattggatatcgtttttacagtggtcgctttcgtgaagagatctgttttaggtgg--------attttgatgggtg 33258652  T
Q  222 ttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtattt 296  Q
    ||||| |  | | ||| ||||| |||||||||||||||||||| | | ||||||||||||||||  |||||||||    
T  33258651 ttgtctttgg-gatgt-ttttatggtgtttattttcgggtgtttcacatatatacggcgccttttatttgtattt 33258579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 182 - 293
Target Start/End: Original strand, 31721950 - 31722058
Alignment:
Q  182 aggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgc 281  Q
    ||||||||||||||||  ||||||| |||||||||| ||||||  | ||  |||| ||||    |||||| ||||||||||||||| |||||||||||||    
T  31721950 aggagtcagttttagg--gtgatgtttattttggtgggtgttgatcacatgggtgcctttgttagtgtttgttttcgggtgttccgtctatatacggcgc 31722047  T
Q  282 ctttagtttgta 293  Q
    | ||||||||||    
T  31722048 c-ttagtttgta 31722058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 295
Target Start/End: Original strand, 8731278 - 8731328
Alignment:
Q  245 ggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    |||||||||||| ||||||| || ||||||||||||||||| |||||||||    
T  8731278 ggtgtttatttttgggtgtttcgtctatatacggcgccttttgtttgtatt 8731328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 165
Target Start/End: Original strand, 34378259 - 34378359
Alignment:
Q  63 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 162  Q
    ||||||||||||||| ||||||| ||  || |||||||| ||||||||| ||||| |||  ||||||||||||||||||  | || |||||| |||||||    
T  34378259 aatgtggctcagcttgggtgttggggtttgagagtttta-ttttgaggg-tgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgttt 34378356  T
Q  163 aca 165  Q
    |||    
T  34378357 aca 34378359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 5656931 - 5656878
Alignment:
Q  149 tggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtg 202  Q
    ||||||||||||||||||| ||  ||||| ||||||||||||||||||| ||||    
T  5656931 tggatatcgtgtttacagttcttctttttatgaaggagtcagttttaggtggtg 5656878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 294
Target Start/End: Original strand, 27713421 - 27713462
Alignment:
Q  253 ttttcgggtgttccgcctatatacggcgcctttagtttgtat 294  Q
    ||||||||||||||||||||||| ||||||||| ||||||||    
T  27713421 ttttcgggtgttccgcctatatatggcgcctttcgtttgtat 27713462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 698522 - 698611
Alignment:
Q  63 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggata 154  Q
    ||||||||||||||| ||||||| || ||| ||||||||  ||||  |||||||| |||  |||||||||||||||| || |||| ||||||    
T  698522 aatgtggctcagcttgggtgttggggtctgagagtttta--tttggagggtgttctttgtgggtgagtagtgacgatcggcgatggtggata 698611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 206
Target Start/End: Complemental strand, 18313504 - 18313425
Alignment:
Q  124 ggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgt 206  Q
    ||||||||||||||||| ||| || |||||||||||||||| ||| | |||||| |   |||||| |||||||| ||||||||    
T  18313504 ggtgagtagtgacgatgagtggtgatggatatcgtgtttacggtgtttgttttttt---ggagtctgttttaggtggtgatgt 18313425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 276
Target Start/End: Original strand, 37108103 - 37108170
Alignment:
Q  208 tattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatac 276  Q
    |||||||||| ||||| ||||||  ||||| ||||||||||||||||||  | ||||||||||||||||    
T  37108103 tattttggtgggtgttatcctcatgggtgt-ttttagggtgtttattttttgatgttccgcctatatac 37108170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 293
Target Start/End: Complemental strand, 25657871 - 25657813
Alignment:
Q  234 gtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgta 293  Q
    |||| ||||| |||||||||||| || ||||| ||||||||||||||||| |||||||||    
T  25657871 gtgttttttatggtgtttattttagg-tgttctgcctatatacggcgcctgtagtttgta 25657813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 177
Target Start/End: Original strand, 29087637 - 29087752
Alignment:
Q  59 ttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgt 158  Q
    |||| |||||||||| ||| | ||||| || ||||||| |||| ||||||||| |  || || | ||||||||||||||||||| | || || ||| |||    
T  29087637 ttcgtatgtggctcaacttagatgttggggtctgggagcttta-ttttgagggtt--tctttaggggtgagtagtgacgatgggcggtggtgaataccgt 29087733  T
Q  159 gtttacagtgctcgttttt 177  Q
    |||||||||||| ||||||    
T  29087734 gtttacagtgcttgttttt 29087752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 295
Target Start/End: Original strand, 5187219 - 5187332
Alignment:
Q  181 aaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcg 280  Q
    |||||||| | |||||| |||||||| || || ||||  |||| ||||||   ||| |||||| |||||||||||||||||| | |  |||||| |||||    
T  5187219 aaggagtctggtttaggtggtgatgtgtacttgggtggatgttatcctcatgagtg-cttttatggtgtttattttcgggtgcttcatctatatgcggcg 5187317  T
Q  281 cctttagtttgtatt 295  Q
    ||||| |||||||||    
T  5187318 ccttttgtttgtatt 5187332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 285
Target Start/End: Original strand, 23426646 - 23426680
Alignment:
Q  251 tattttcgggtgttccgcctatatacggcgccttt 285  Q
    ||||||||||||||||||||||||||||| |||||    
T  23426646 tattttcgggtgttccgcctatatacggcaccttt 23426680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 285
Target Start/End: Original strand, 6159827 - 6159866
Alignment:
Q  245 ggtgtttattttcgggtgttccgcctatatacggcgccttt 285  Q
    |||||||||||| ||||||||||||||||||| ||||||||    
T  6159827 ggtgtttatttt-gggtgttccgcctatatacagcgccttt 6159866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 56 - 295
Target Start/End: Complemental strand, 10248497 - 10248256
Alignment:
Q  56 cttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt-cgttggtgg-tgagtagtgacgatgggtgatgttggat 153  Q
    ||||||| |||||||||| |||||||||||||||||  |||||| |||||||| ||||||| |||||| || ||||||||||||||||||| ||| ||||    
T  10248497 cttttcggatgtggctcaactttggtgttgaggacttagagttt-aattttgacgggtgtttcgttggggggtgagtagtgacgatgggtgttgtgggat 10248399  T
Q  154 atcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtg-ttta 252  Q
     |||| ||||||||| ||||||| ||||||||||  |||||||| ||||| || |||||||| | ||||||||||||  ||||| ||||| |||| |||     
T  10248398 gtcgtttttacagtggtcgttttcgtgaaggagtttgttttaggtggtgacgtgtattttggcgggtgttgtcctcaagggtgttttttaaggtgttttt 10248299  T
Q  253 ttttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    |||| |||||||||||||||||||| ||||||||| |||||||    
T  10248298 ttttagggtgttccgcctatatacgacgcctttaggttgtatt 10248256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 12198036 - 12197757
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggc---tcagctttggtgttgaggactgggagttttaattttgaggggtg 114  Q
    |||||||| |||||| | ||||||||||| | || |||||||||| ||||| |   ||| |||| ||||||||  |||||||||| ||||||            
T  12198036 gagaggtgatggaagttcaatgatctttcggatatgagcttttcggatgtgccgcctcatctttagtgttgagttctgggagttt-aatttt-------- 12197946  T
Q  115 ttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttg 214  Q
    ||| |||| ||||||||||||||| ||||| || |||||||||| |||  |||| |||| ||  |||||| ||| ||| |||| ||||| || ||||||     
T  12197945 ttctttgggggtgagtagtgacgacgggtggtgctggatatcgtttttttagtggtcgtgttcatgaaggcgtctgttgtaggtggtgacgtgtattttt 12197846  T
Q  215 gtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtattttttgattc 304  Q
    ||| ||||||||| |||||||||||||||||||||||||||||  |||||||||||||| ||| ||||||||||||||||| | ||||||    
T  12197845 gtg-gtgttgtccccagaggtgtcttttagggtgtttattttcccgtgttccgcctatagacgacgcctttagtttgtattctctgattc 12197757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 12442464 - 12442185
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggc---tcagctttggtgttgaggactgggagttttaattttgaggggtg 114  Q
    |||||||| |||||| | ||||||||||| | || |||||||||| ||||| |   ||| |||| ||||||||  |||||||||| ||||||            
T  12442464 gagaggtgatggaagttcaatgatctttcggatatgagcttttcggatgtgccgcctcatctttagtgttgagttctgggagttt-aatttt-------- 12442374  T
Q  115 ttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttg 214  Q
    ||| |||| ||||||||||||||| ||||| || |||||||||| |||  |||| |||| ||  |||||| ||| ||| |||| ||||| || ||||||     
T  12442373 ttctttgggggtgagtagtgacgacgggtggtgctggatatcgtttttttagtggtcgtgttcatgaaggcgtctgttgtaggtggtgacgtgtattttt 12442274  T
Q  215 gtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtattttttgattc 304  Q
    ||| ||||||||| |||||||||||||||||||||||||||||  |||||||||||||| ||| ||||||||||||||||| | ||||||    
T  12442273 gtg-gtgttgtccccagaggtgtcttttagggtgtttattttcccgtgttccgcctatagacgacgcctttagtttgtattctctgattc 12442185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 119 - 290
Target Start/End: Complemental strand, 17656603 - 17656432
Alignment:
Q  119 ttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgt-gaaggagtcagttttaggcggtgatgtatattttggtg 217  Q
    |||| ||||||||||||| ||| | | ||||||||||||| ||| ||||| |||||||| | ||||||||| |||||||  ||||| ||  |||||||||    
T  17656603 ttgggggtgagtagtgacaatgagcggtgttggatatcgtttttgcagtggtcgtttttcttgaaggagtctgttttagatggtgacgtgaattttggtg 17656504  T
Q  218 agtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagttt 290  Q
     ||||||||||||  ||||| |||||||||||| |||||||||||||||| ||||||||| ||||||| ||||    
T  17656503 ggtgttgtcctcaagggtgt-ttttagggtgttaattttcgggtgttccgtctatatacgacgccttttgttt 17656432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 128 - 293
Target Start/End: Complemental strand, 8862481 - 8862314
Alignment:
Q  128 agtagtgacgatgggtgatgtt-ggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtc 226  Q
    ||||||||||| | ||| |||| |||||| || |||||| || | ||| | ||| | |||||||||||||| ||||| || |||||| ||| ||||||||    
T  8862481 agtagtgacgacgtgtggtgtttggatattgtttttacaatggttgttctcgtgtaagagtcagttttaggtggtgacgtgtatttttgtgggtgttgtc 8862382  T
Q  227 ctcagaggtgtcttttagggtgttta-ttttcgggtgttccgcctatatacggcgcctttagtttgta 293  Q
    ||  | ||||| ||||| |||||||| ||||||| ||||||| ||||||||||||||||| |||||||    
T  8862381 cttcggggtgttttttatggtgtttatttttcggatgttccgtctatatacggcgccttttgtttgta 8862314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 21 - 116
Target Start/End: Complemental strand, 17656967 - 17656873
Alignment:
Q  21 aggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt 116  Q
    |||||||||||||||||||||||||||  ||||||||||||  | |||||||| |||||||||| | || |||||| |||||||||||||||||||    
T  17656967 aggtggtggaagctgaatgatctttcatataggagcttttcagaggtggctcaactttggtgttcatgattgggag-tttaattttgaggggtgtt 17656873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 64 - 250
Target Start/End: Complemental strand, 43312558 - 43312375
Alignment:
Q  64 atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttta 163  Q
    ||||| |||||||||| ||||||| ||| ||||||| || |||||| | | |||||||| || ||||||||||||||  || ||| ||||||||| ||||    
T  43312558 atgtgactcagctttgatgttgagaactaggagttt-aactttgagagtt-ttcgttgggggcgagtagtgacgatgtatggtgtgggatatcgttttta 43312461  T
Q  164 cagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtt 250  Q
    ||||| ||||||||||| ||||||| | |||||| |||||  | ||||||| || |||||||  |||| ||||| ||||||| ||||    
T  43312460 cagtggtcgtttttgtgtaggagtctgatttaggtggtgacatgtattttgatgggtgttgt-ttcagcggtgttttttaggatgtt 43312375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 170
Target Start/End: Complemental strand, 31207315 - 31207177
Alignment:
Q  31 agctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgag 129  Q
    |||||||||| | ||| | |||| ||| |||||| ||||||||||||| |||||||  |  ||||||||||| ||||||||| ||||| |||  ||||||    
T  31207315 agctgaatgacccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggagtatgggagtttta-ttttgaggg-tgttctttgtgggtgag 31207218  T
Q  130 tagtgacgatgggtgatgttggatatcgtgtttacagtgct 170  Q
    ||||||||||||| |||| ||||||  ||||||||||||||    
T  31207217 tagtgacgatgggcgatggtggatactgtgtttacagtgct 31207177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 206
Target Start/End: Original strand, 20138598 - 20138726
Alignment:
Q  74 gctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgt 173  Q
    |||| ||||||| || |||||||||||| ||||||||| ||||| |||  ||||||||||||||||||  | || |||||| ||||||||||||||| |     
T  20138598 gcttgggtgttggggtctgggagttttatttttgaggg-tgttctttgtaggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttga 20138696  T
Q  174 ttttgtgaaggagtcagttttaggcggtgatgt 206  Q
    |||| |   |||||| |||||||| ||||||||    
T  20138697 tttttt---ggagtctgttttaggtggtgatgt 20138726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 293
Target Start/End: Complemental strand, 41791070 - 41790961
Alignment:
Q  184 gagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttt-tagggtgtttattttcgggtgttccgcctatatacggcgcc 282  Q
    |||||||||||||| |||||||| |||||||||| | |||||||| |   |||||||| | |||| |||||||| |||||||||||||||||||| |  |    
T  41791070 gagtcagttttagggggtgatgtttattttggtgggggttgtccttatgagtgtctttattgggt-tttatttttgggtgttccgcctatatacgacatc 41790972  T
Q  283 tttagtttgta 293  Q
    |||||||||||    
T  41790971 tttagtttgta 41790961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 177
Target Start/End: Complemental strand, 41893322 - 41893210
Alignment:
Q  63 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 162  Q
    ||||||||||||||| |||||||||| ||||||||| || |||| |||| ||||| |||  ||||||||||||||||||  | || |||||| |||||||    
T  41893322 aatgtggctcagcttgggtgttgaggtctgggagttcta-ttttcaggg-tgttctttgtgggtgagtagtgacgatggtcggtggtggataccgtgttt 41893225  T
Q  163 acagtgctcgttttt 177  Q
    ||||| || ||||||    
T  41893224 acagttcttgttttt 41893210  T

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Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 177
Target Start/End: Complemental strand, 37986778 - 37986666
Alignment:
Q  63 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 162  Q
    ||||||||||||||| ||||||  || ||||||||||||  ||||  |||||||| |||  |||||||| |||||||||||| || | |||| |||||||    
T  37986778 aatgtggctcagcttgggtgtttcggtctgggagtttta--tttggagggtgttctttgtgggtgagtaatgacgatgggtggtggtagataccgtgttt 37986681  T
Q  163 acagtgctcgttttt 177  Q
    ||| |||| ||||||    
T  37986680 acaatgcttgttttt 37986666  T

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Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 168
Target Start/End: Complemental strand, 38577748 - 38577606
Alignment:
Q  26 gtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactggg-agttttaattttgaggggtgttcgttggtg 124  Q
    |||||||||| ||| || ||| | | |||||||||||||| |||| || ||| |||||||| | ||||| ||||||| ||||| || |||||| |||| |    
T  38577748 gtggaagctgcatgttcattcggtttggagcttttcgaatatggcgcaacttgggtgttgaagtctggggagtttta-ttttgtggagtgttctttgggg 38577650  T
Q  125 gtgagtagtgacgatgggtgatgttggatatcgtgtttacagtg 168  Q
     |||||||||||||||| ||||  ||||||  ||||||||||||    
T  38577649 atgagtagtgacgatggatgattgtggatactgtgtttacagtg 38577606  T

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Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 15821313 - 15821224
Alignment:
Q  50 taggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatg 140  Q
    |||||||||||||||||||||||||||  | |||||| | ||||||||||| ||||||||| |||||| || |  |||||||||| |||||    
T  15821313 taggagcttttcgaatgtggctcagctcggatgttgaagtctgggagtttt-attttgaggagtgttcttttggagtgagtagtggcgatg 15821224  T

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Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 30235857 - 30235809
Alignment:
Q  245 ggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgta 293  Q
    ||||||| ||||||| |||||||||||||||||| ||||||||||||||    
T  30235857 ggtgtttgttttcggatgttccgcctatatacggagcctttagtttgta 30235809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 168
Target Start/End: Original strand, 9519627 - 9519764
Alignment:
Q  31 agctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgagga-ctgggagttttaattttgaggggtgttcgttggtggtga 128  Q
    ||||| |||||| ||| | |||| ||| |||||| | ||||||||||| ||||||| ||  ||| |||||||| ||||||||| ||||| |||  |||||    
T  9519627 agctgcatgatcattcggttaggtgctcttcgaaatatggctcagcttgggtgttgggggtctgagagtttta-ttttgaggg-tgttctttgtgggtga 9519724  T
Q  129 gtagtgacgatgggtgatgttggatatcgtgtttacagtg 168  Q
    |||||||||||||| | || |||||| |||||||||||||    
T  9519725 gtagtgacgatgggcggtggtggataccgtgtttacagtg 9519764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 17720444 - 17720398
Alignment:
Q  248 gtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||    
T  17720444 gtttatttt-gggtgttctgcctatatacggcgcctttagtttgtatt 17720398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 8862563 - 8862505
Alignment:
Q  24 tggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtg 82  Q
    ||||||||||||||||||||||| | || || ||||||  |||||||||||||||||||    
T  8862563 tggtggaagctgaatgatctttcggatatgaacttttcagatgtggctcagctttggtg 8862505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 30235935 - 30235889
Alignment:
Q  182 aggagtcagttttaggcggtgatgtatattttggtgagtgttgtcct 228  Q
    |||||||||||||||| |||||||| |||||||||| ||||||||||    
T  30235935 aggagtcagttttagggggtgatgtttattttggtgggtgttgtcct 30235889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 165
Target Start/End: Complemental strand, 35816201 - 35816066
Alignment:
Q  26 gtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtgg 125  Q
    |||||||||| ||| || ||| | || ||| |||||||||||||||||| || | |||||| | | | |||||    ||||||||||||||| |||| ||    
T  35816201 gtggaagctgcatgttcattcggttaagagtttttcgaatgtggctcagtttggatgttgaagtcagagagtt----ttttgaggggtgttctttggggg 35816106  T
Q  126 tgagtagtgacgatgggtgatgttggatatcgtgtttaca 165  Q
    |||||||||| |||||||| |  ||||||  |||||||||    
T  35816105 tgagtagtgatgatgggtggttgtggatactgtgtttaca 35816066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 177
Target Start/End: Complemental strand, 24995348 - 24995202
Alignment:
Q  31 agctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgagga-ctgggagttttaattttgaggggtgttcgttggtggtga 128  Q
    ||||| |||||| ||| | |||| ||| |||||| | ||||||||||| ||||||| ||  || ||||||||| ||||||||| ||||| |||   ||||    
T  24995348 agctgcatgatccttcggttaggtgctcttcgaaatatggctcagcttgggtgttgggggtctaggagtttta-ttttgaggg-tgttctttgtgcgtga 24995251  T
Q  129 gtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 177  Q
    |||||||||||||| | || |||||| |||||||||| |||| ||||||    
T  24995250 gtagtgacgatgggcggtggtggataccgtgtttacaatgcttgttttt 24995202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 9831741 - 9831694
Alignment:
Q  248 gtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    ||||||||||||||| || ||||||||||| || ||||||||||||||    
T  9831741 gtttattttcgggtggtcggcctatatacgacgtctttagtttgtatt 9831694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 256
Target Start/End: Complemental strand, 22325931 - 22325826
Alignment:
Q  150 ggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgt 249  Q
    ||||||||| |||||| || |||||||||| |||||||| ||||||   |||||  |||||||||||| |||| ||| | |  ||||| ||||||| |||    
T  22325931 ggatatcgtttttacaatggtcgtttttgttaaggagtctgttttatatggtgacctatattttggtgggtgtcgtcattatgggtgt-ttttaggatgt 22325833  T
Q  250 ttatttt 256  Q
    |||||||    
T  22325832 ttatttt 22325826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 170
Target Start/End: Complemental strand, 34388925 - 34388822
Alignment:
Q  64 atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttta 163  Q
    |||||||||||||| ||||||| ||  || |||||||| ||||||||| ||||| |||  |||||||||||||||| || | || |||||| ||||||||    
T  34388925 atgtggctcagcttgggtgttggggtatgagagtttta-ttttgaggg-tgttctttgtgggtgagtagtgacgataggcggtggtggata-cgtgttta 34388829  T
Q  164 cagtgct 170  Q
    || ||||    
T  34388828 cattgct 34388822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 293
Target Start/End: Complemental strand, 5215044 - 5215000
Alignment:
Q  248 gtttattttcgggtgttccgcctatatacggcgcctttagtttgta 293  Q
    |||| |||||||||||| ||||||||||||||||| ||||||||||    
T  5215044 gtttgttttcgggtgtttcgcctatatacggcgcc-ttagtttgta 5215000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 12898195 - 12898120
Alignment:
Q  63 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatg 140  Q
    ||||||||||||||| ||||||| || ||  |||||||| ||||||||| ||||| |||  |||||||||||||||||    
T  12898195 aatgtggctcagcttgggtgttggggtcttagagtttta-ttttgaggg-tgttctttgtgggtgagtagtgacgatg 12898120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 16457336 - 16457283
Alignment:
Q  124 ggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 177  Q
    ||||||||||||||||||  | || |||||| ||||||||||||||| ||||||    
T  16457336 ggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgttttt 16457283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 206
Target Start/End: Original strand, 36631039 - 36631123
Alignment:
Q  119 ttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgt 206  Q
    |||| |||||||||| |||||||| | || |||||| ||||||||||||| | |||||| |   |||||| |||||||| ||||||||    
T  36631039 ttgggggtgagtagttacgatgggcggtggtggataccgtgtttacagtgtttgttttttt---ggagtctgttttaggtggtgatgt 36631123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 5221553 - 5221506
Alignment:
Q  235 tgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 283  Q
    ||||||||  ||||||| |||| ||||||||||||||||||||||||||    
T  5221553 tgtcttttttggtgtttctttt-gggtgttccgcctatatacggcgcct 5221506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 10552609 - 10552645
Alignment:
Q  245 ggtgtttattttcgggtgttccgcctatatacggcgc 281  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  10552609 ggtgtttgttttcggatgttccgcctatatacggcgc 10552645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 22 - 264
Target Start/End: Complemental strand, 24324761 - 24324520
Alignment:
Q  22 ggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt---cg 118  Q
    ||||||||||||||||||||||||| | |||||||||||||  |||||||||||||||||||| ||||| | |||||||| ||||||||||||||   |     
T  24324761 ggtggtggaagctgaatgatctttcggttaggagcttttcggctgtggctcagctttggtgttcaggacggagagtttta-ttttgaggggtgtttttct 24324663  T
Q  119 ttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt-gtgaaggagtcagttttaggcggtgatgtatattttggtg 217  Q
    || | |||||||||||||||||| ||  ||||||||||||  ||||| || |||||||| ||||||||||| |||||| | ||||| || ||||||||||    
T  24324662 ttaggggtgagtagtgacgatgg-tg--gttggatatcgttcttacaatggtcgtttttcgtgaaggagtctgttttaagtggtgacgtgtattttggtg 24324566  T
Q  218 agtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgtt 264  Q
    |||||||||||||  ||||| |||||| |||||||||||||||||||    
T  24324565 agtgttgtcctcaagggtgt-ttttagagtgtttattttcgggtgtt 24324520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 3478465 - 3478729
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttc 117  Q
    ||||||||| ||||||||||||||||||| | |  || ||||||  |  ||||| ||||||||||||||||||||||||||| |||||||||| ||||||    
T  3478465 gagaggtggcggaagctgaatgatctttcggatgtgaacttttctgagttggctaagctttggtgttgaggactgggagttt-aattttgaggagtgttc 3478563  T
Q  118 gttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtg 217  Q
     |||| ||||||||||||||| || || || |||||||||  ||||||||| |||| || ||||||  ||| |||| ||  |||||  | | ||||||||    
T  3478564 tttgg-ggtgagtagtgacgacggttggtgatggatatcgcttttacagtg-tcgtattcgtgaagacgtctgtttgagttggtgacttgttttttggtg 3478661  T
Q  218 agtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgccttt 285  Q
      |||||| ||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3478662 gatgttgtgctctggattgtcttttagggtgtttattttcgggtgttccgcctatatacggcgccttt 3478729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 6716705 - 6716427
Alignment:
Q  18 gagaggtggtggaagctgaatgatcttt-cagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt 116  Q
    ||||||||||||||||||| |||||||| | | || ||  ||| || |||||||||||||||||||||||||| ||||||||| ||||||| ||||||||    
T  6716705 gagaggtggtggaagctgattgatcttttcggataagatttttccggatgtggctcagctttggtgttgaggaatgggagttt-aattttgtggggtgtt 6716607  T
Q  117 -cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttgg 215  Q
     |||||| ||||||||||||| ||||||| |||  |||| ||| ||||||||| ||||||| ||||||||||  |||||||| ||||   | || || ||    
T  6716606 tcgttgggggtgagtagtgacaatgggtggtgtgagataccgtttttacagtggtcgttttcgtgaaggagt--gttttaggtggtgtcatgtacttggg 6716509  T
Q  216 tgagtgttgtcctc-agag-gtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    |  ||||| |||||  ||| || | ||||||||||||||||||| |||||||||  |||||||||| |||||| ||||||||    
T  6716508 ttggtgttatcctcgtgagtgttttttttagggtgtttattttcaggtgttccggttatatacggcccctttaatttgtatt 6716427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 8745266 - 8745405
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtg--- 114  Q
    ||||||| |||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||| | ||||||||| |||||||||||||||||       
T  8745266 gagaggttgtggaagctgcatgatctttcagataggagcttttcggatgtggctcagctttggtgttcaagactgggag-tttaattttgaggggtgttt 8745364  T
Q  115 ttcgttggtggtgagtagtgacgatgggtgatgttggatat 155  Q
    ||| |||| ||||||||||||||| || || ||||||||||    
T  8745365 ttctttgggggtgagtagtgacgaaggatggtgttggatat 8745405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 124 - 295
Target Start/End: Original strand, 33719185 - 33719355
Alignment:
Q  124 ggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttt-tgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgt 222  Q
    ||||||||||||||||| ||  ||||||||||| | ||||||| | ||||||| |||||||||||| |||||||||||||||   |||||||||| ||||    
T  33719185 ggtgagtagtgacgatgagtagtgttggatatcatttttacagaggtcgttttttgtgaaggagtcggttttaggcggtgataggtattttggtgggtgt 33719284  T
Q  223 tgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    ||||||||   |||| |||||||||||||| |||| | |||||||||||||| | ||||| || |||||||||    
T  33719285 tgtcctcatgagtgt-ttttagggtgtttactttc-gatgttccgcctatattcagcgccgtttgtttgtatt 33719355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 177
Target Start/End: Complemental strand, 47325838 - 47325693
Alignment:
Q  31 agctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgag 129  Q
    |||||||||||| ||| | |||| ||| |||||| ||||||||||||| ||||||| || |||||||||||| ||||||||| ||||| |||  ||||||    
T  47325838 agctgaatgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctgggagtttta-ttttgaggg-tgttctttgtgggtgag 47325741  T
Q  130 tagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 177  Q
    ||||||||||||| |||| ||||||  |||||||||||||| ||||||    
T  47325740 tagtgacgatgggcgatgatggatactgtgtttacagtgcttgttttt 47325693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 280
Target Start/End: Original strand, 1321014 - 1321169
Alignment:
Q  124 ggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaa-ggagtcagttttaggcggtgatgtatattttggtgagtgt 222  Q
    ||||||||||||||||| ||| | || |||||||| ||||||||| | | ||| ||||| || ||| |||||||| |||||||| ||||||||||  ||     
T  1321014 ggtgagtagtgacgatgagtggtattagatatcgtttttacagtggttgctttcgtgaaaggggtctgttttaggtggtgatgtgtattttggtggatgg 1321113  T
Q  223 tgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcg 280  Q
    |||| ||| ||| || |||||||||||||||||||||| |||||||||||||||||||    
T  1321114 tgtcttca-aggggt-ttttagggtgtttattttcgggagttccgcctatatacggcg 1321169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 34390077 - 34390202
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttc 117  Q
    ||||||| |||||||||| ||| || |||   |||||||||||| ||||||||||| ||| |||||||  | ||||||||||| ||||||||||||||||    
T  34390077 gagaggttgtggaagctgcatgttcattcgattaggagcttttcaaatgtggctcaacttgggtgttgtagtctgggagtttt-attttgaggggtgttc 34390175  T
Q  118 gttggtggtgagtagtgacgatgggtg 144  Q
     |||| | |||||||||||||||||||    
T  34390176 tttggggatgagtagtgacgatgggtg 34390202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 177
Target Start/End: Complemental strand, 31972054 - 31971942
Alignment:
Q  63 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 162  Q
    ||||||||||||||| ||||||| || ||||||||||||  ||||  |||||||| |||  ||||||||||||||||||| | || | |||| |||||||    
T  31972054 aatgtggctcagcttgggtgttggggtctgggagtttta--tttggagggtgttctttgtgggtgagtagtgacgatgggcggtggttgataccgtgttt 31971957  T
Q  163 acagtgctcgttttt 177  Q
    |||||||| ||||||    
T  31971956 acagtgcttgttttt 31971942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 170 - 264
Target Start/End: Complemental strand, 6492946 - 6492852
Alignment:
Q  170 tcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgtt 264  Q
    |||||||| |||||||||| |||||||| ||||| ||  |||||||||  ||||||||||| |||||| ||||| ||||||||||||| ||||||    
T  6492946 tcgtttttatgaaggagtctgttttaggtggtgacgtgaattttggtggatgttgtcctcataggtgttttttatggtgtttattttcaggtgtt 6492852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 64 - 177
Target Start/End: Original strand, 38306423 - 38306534
Alignment:
Q  64 atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttta 163  Q
    |||||||||||||| ||||||| || ||| |||||||| ||||||||| ||||| |||  ||||||||||||||||||||| || |||||||||||| |     
T  38306423 atgtggctcagcttgggtgttggggtctgtgagtttta-ttttgaggg-tgttctttgtaggtgagtagtgacgatgggtggtggtggatatcgtgtctg 38306520  T
Q  164 cagtgctcgttttt 177  Q
    |||| || ||||||    
T  38306521 cagttcttgttttt 38306534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 206
Target Start/End: Original strand, 3867278 - 3867415
Alignment:
Q  64 atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttta 163  Q
    |||||||||||||| |||||||  |  ||| ||||||| ||||||||| ||||| |||| ||||||||||||||||||  | || |||||||||||||||    
T  3867278 atgtggctcagcttgggtgttggagtatggaagtttta-ttttgaggg-tgttctttgggggtgagtagtgacgatggacggtggtggatatcgtgttta 3867375  T
Q  164 cagtgctcgtttttgtgaaggagtcagttttaggcggtgatgt 206  Q
    |||   | ||||||||||||||||  ||||| || ||||||||    
T  3867376 cag---ttgtttttgtgaaggagtttgttttgggtggtgatgt 3867415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 295
Target Start/End: Complemental strand, 16828906 - 16828791
Alignment:
Q  179 tgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacgg 278  Q
    |||||| | |||||||||  | |||||| ||||||||||  |||| || |||| ||| | || |||| ||||||||||||||||||||||||||||||||    
T  16828906 tgaaggggccagttttagatgatgatgtgtattttggtggttgttttcttcaggggtat-ttctaggatgtttattttcgggtgttccgcctatatacgg 16828808  T
Q  279 cgcctttagtttgtatt 295  Q
    ||| ||| |||||||||    
T  16828807 cgcattttgtttgtatt 16828791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 23983320 - 23983530
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttc 117  Q
    |||||||||||  || |||||||||||||   || |||||||||| || ||| ||||||||| || ||||||| | || ||| | ||| ||| ||| |||    
T  23983320 gagaggtggtgacagttgaatgatctttcgaatatgagcttttcggatctggttcagctttgatgatgaggaccgagaatttca-tttagagcggtcttc 23983418  T
Q  118 gttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtg 217  Q
     || | |||||||||||| |||||||  |  || ||||||| ||| ||||| | ||||| ||||| ||||| |||||||| |||| ||| ||||||||||    
T  23983419 ttttggggtgagtagtgatgatgggtagttatgtatatcgttttt-cagtggttgttttcgtgaatgagtctgttttaggtggtggtgtttattttggtg 23983517  T
Q  218 agtgttgtcctca 230  Q
     ||||||||||||    
T  23983518 ggtgttgtcctca 23983530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 295
Target Start/End: Complemental strand, 42533117 - 42532950
Alignment:
Q  127 gagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtc 226  Q
    |||||||||||||||||| | |||||| || | |||||| || | | ||| |||||   ||  |||||||| | ||| |||| |||| ||| ||||||||    
T  42533117 gagtagtgacgatgggtggtattggatttcatttttacaatggttgctttcgtgaataggtatgttttaggtgatgacgtatttttttgtgggtgttgtc 42533018  T
Q  227 ctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
     |||  || || ||||||||||||||||| | ||||||||||||||||||||||||||| | |||||||    
T  42533017 atcaagggagt-ttttagggtgtttatttccaggtgttccgcctatatacggcgccttttggttgtatt 42532950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 35745792 - 35745601
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcga---at-gtggctcagctttggtgttgaggactgggagttttaattttgaggggt 113  Q
    ||||||| |||||||||| ||| || ||| | ||||||||||||||   || |||||||||||| |||||||| | |||   |||||| ||||||| |||    
T  35745792 gagaggttgtggaagctgcatgttcattcggttaggagcttttcgatatatagtggctcagcttgggtgttgaagtctgactgtttta-ttttgagaggt 35745694  T
Q  114 gttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgt 206  Q
    |||| |||| |||||||||||||||||||||  | ||||| | |||||||  ||| | |||| ||| |||| ||| || ||||| ||||||||    
T  35745693 gttctttgggggtgagtagtgacgatgggtgggggtggatgttgtgtttagtgtgtttgtttctgttaaggtgtctgtcttaggtggtgatgt 35745601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 206
Target Start/End: Complemental strand, 44353473 - 44353345
Alignment:
Q  74 gctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgt 173  Q
    |||| ||||||| || |||||||||||| ||||||||| ||||| |||  ||||||||||||||||||  | || |||||| ||||||||||||||| |     
T  44353473 gcttgggtgttggggtctgggagttttatttttgaggg-tgttctttgtaggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttga 44353375  T
Q  174 ttttgtgaaggagtcagttttaggcggtgatgt 206  Q
    |||| |   |||||| |||||||| ||||||||    
T  44353374 tttttt---ggagtctgttttaggtggtgatgt 44353345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 6585043 - 6585118
Alignment:
Q  64 atgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatg 140  Q
    |||||||||||||| |||||||| | ||||||||||| ||||||||||||| |  |||| |||||||||||||||||    
T  6585043 atgtggctcagcttgggtgttgaagtctgggagtttt-attttgaggggtgctatttggaggtgagtagtgacgatg 6585118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 294
Target Start/End: Original strand, 16954775 - 16954878
Alignment:
Q  190 gttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtt 289  Q
    |||||||| ||||| || |||||| |||  |||| || |||| ||||| |||||| |||||||||||||| |||||||||||||||||| ||||||  ||    
T  16954775 gttttaggtggtgacgtgtatttttgtggttgttttcttcaggggtgt-ttttagcgtgtttattttcggatgttccgcctatatacggtgccttttatt 16954873  T
Q  290 tgtat 294  Q
    |||||    
T  16954874 tgtat 16954878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 177
Target Start/End: Complemental strand, 5860241 - 5860096
Alignment:
Q  31 agctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgag 129  Q
    ||||| |||||| ||||| |||| ||| |||||| ||||||||||||| ||||||| || ||||||||||| ||||| | |||||||| |||  | ||||    
T  5860241 agctgcatgatccttcagttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctgggagtttt-attttca-gggtgttctttgtggatgag 5860144  T
Q  130 tagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 177  Q
    |||||||||||||  ||| || ||| |||||| | |||||| ||||||    
T  5860143 tagtgacgatgggcaatggtgaataccgtgttaatagtgcttgttttt 5860096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 295
Target Start/End: Complemental strand, 28534240 - 28534195
Alignment:
Q  250 ttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||    
T  28534240 ttattttcgggtgttccgcctatatacggcgccttttatttgtatt 28534195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 13312180 - 13312227
Alignment:
Q  248 gtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||    
T  13312180 gtttattttcgggtgttccgcctatatacaaagcctttagtttgtatt 13312227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 237
Target Start/End: Complemental strand, 28534336 - 28534277
Alignment:
Q  178 gtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgt 237  Q
    ||||| ||||| |||||||| |||||||| |||||||||| ||||||||||||| |||||    
T  28534336 gtgaaagagtctgttttaggtggtgatgtttattttggtgggtgttgtcctcaggggtgt 28534277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 294
Target Start/End: Original strand, 36674809 - 36674859
Alignment:
Q  244 gggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtat 294  Q
    |||||||||||||||| | ||||||||||||||| ||||||| ||||||||    
T  36674809 gggtgtttattttcggatattccgcctatatacgacgccttttgtttgtat 36674859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 295
Target Start/End: Complemental strand, 22567818 - 22567783
Alignment:
Q  260 gtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    |||||||||||||||||||||||||| |||||||||    
T  22567818 gtgttccgcctatatacggcgccttttgtttgtatt 22567783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 301
Target Start/End: Original strand, 9107481 - 9107547
Alignment:
Q  235 tgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtattttttga 301  Q
    ||||||||| |||||| ||||| | | ||||||||| ||||||||||||||  |||||||| |||||    
T  9107481 tgtcttttatggtgttcatttttgtgcgttccgcctttatacggcgcctttgatttgtattctttga 9107547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 285
Target Start/End: Complemental strand, 26385903 - 26385858
Alignment:
Q  239 ttttagggtgtttattttcgggtgttccgcctatatacggcgccttt 285  Q
    ||||| |||||||||||| ||||||||||||||||||||||| ||||    
T  26385903 ttttatggtgtttatttt-gggtgttccgcctatatacggcgtcttt 26385858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 8745469 - 8745521
Alignment:
Q  244 gggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatttt 297  Q
    |||||||| |||||||||||||||||||||||||||| || | |||| ||||||    
T  8745469 gggtgttt-ttttcgggtgttccgcctatatacggcgtctcttgtttctatttt 8745521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 295
Target Start/End: Original strand, 25438691 - 25438748
Alignment:
Q  239 ttttagggtgttta-ttttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    ||||| |||||||| |||||||||||||||||||||||||| || | | |||||||||    
T  25438691 ttttatggtgtttacttttcgggtgttccgcctatatacggggcatatcgtttgtatt 25438748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 42533219 - 42533158
Alignment:
Q  20 gaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggt 81  Q
    |||||||||| | ||||| |||||||||| || |||||||||| || ||| |||||||||||    
T  42533219 gaggtggtggcaactgaacgatctttcagataagagcttttcggatatggatcagctttggt 42533158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 23983574 - 23983634
Alignment:
Q  235 tgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    ||||||||| | |||||||||| || || ||||||||||||||  ||||||| ||||||||    
T  23983574 tgtcttttatgatgtttatttttggatgctccgcctatatacgatgcctttaatttgtatt 23983634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 170
Target Start/End: Original strand, 37795117 - 37795255
Alignment:
Q  31 agctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgag 129  Q
    ||||| |||||| ||| | |||| ||| |||||| ||||||||||||| ||||||| ||  || |||||||| ||||||||| ||||| |||  | | ||    
T  37795117 agctgcatgatccttcggttaggtgctcttcgaactgtggctcagcttgggtgttggggtttgagagtttta-ttttgaggg-tgttctttgtggttaag 37795214  T
Q  130 tagtgacgatgggtgatgttggatatcgtgtttacagtgct 170  Q
    |||| | |||||| | || |||||| |||||||||||||||    
T  37795215 tagtaatgatgggcggtggtggataccgtgtttacagtgct 37795255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 36822 - 37097
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt- 116  Q
    |||| |||||||||| |||||| |||||| | |||||||||||||| |||||||||||||||||||| ||||| ||| ||| |  |||| |||||||||     
T  36822 gagatgtggtggaagttgaatggtctttcggttaggagcttttcgattgtggctcagctttggtgttcaggacggggggttat--tttttaggggtgttt 36919  T
Q  117 --cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttg 214  Q
      | |||| |||||||||||||| ||| ||  ||||||| |||| ||||||||| | ||||  ||||||||||| |||||||| ||||| || |||||||    
T  36920 ttctttgggggtgagtagtgacggtggatg--gttggatgtcgtttttacagtggtggtttc-gtgaaggagtctgttttaggtggtgacgtgtattttg 37016  T
Q  215 gtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
     || |||| |||||||  ||||| ||||| ||||||||||||||| |||||||||||||||| ||| |||| |||||||||    
T  37017 ttgggtgtggtcctcatgggtgttttttatggtgtttattttcggatgttccgcctatatacagcgtcttttgtttgtatt 37097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 19 - 295
Target Start/End: Complemental strand, 16832988 - 16832711
Alignment:
Q  19 agaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt-- 116  Q
    ||||||| | |||||||||||||||||  | || |||||||||| |||||||||| |||||||||| | ||||| |||||| ||||||||||||||||      
T  16832988 agaggtgattgaagctgaatgatctttgggatatgagcttttcggatgtggctcaactttggtgttcaagactgtgagttt-aattttgaggggtgtttt 16832890  T
Q  117 --cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt-gtgaaggagtcagttttaggcggtgatgtatatttt 213  Q
      | |||| ||||||||||||||| ||||| ||||||||||| | ||||||| | |||||||| ||| |||| |  |||||||| ||||| || |||||     
T  16832889 ttctttgg-ggtgagtagtgacgacgggtggtgttggatatcttttttacagcggtcgtttttcgtgcaggaatatgttttaggtggtgacgtttattt- 16832792  T
Q  214 ggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    |||| |||||||||||||  | || ||||||||||||||||||  |||||||||||||||| | |||||||| |||||||||    
T  16832791 ggtgggtgttgtcctcaggagagt-ttttagggtgtttattttttggtgttccgcctatatgcagcgccttttgtttgtatt 16832711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 19311342 - 19311069
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaat--------tttgag 109  Q
    |||||||||||||||||| |||||||||  | || |||||||| |||||||| || |||||||||||||||||| |||||| | |         ||||||    
T  19311342 gagaggtggtggaagctgtatgatcttttggttaagagctttttgaatgtggttcggctttggtgttgaggactaggagttcttacggtgctcgtttgag 19311243  T
Q  110 ggg-tgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtat 208  Q
    ||| | ||| |||| |||||| ||||||| |||  ||||||||||||||| ||||||||||||||||| |||||||| || ||||  || ||||| || |    
T  19311242 ggggtattctttgggggtgagcagtgacggtggaggatgttggatatcgtttttacagtgctcgttttcgtgaaggaatctgtttatggtggtgacgtgt 19311143  T
Q  209 attttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcct 283  Q
    ||||||||| ||||| ||| ||| || || |||||||||||||| |||||| |||||||||||| ||||| ||||    
T  19311142 attttggtgggtgttatccccaggggagt-ttttagggtgtttaatttcggatgttccgcctatttacggtgcct 19311069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 41117935 - 41117677
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttc 117  Q
    |||||||||||||||||||||||||||||   |||||||||| || | ||||||||| ||||||||| | ||  |||||||||| || |||||||||||     
T  41117935 gagaggtggtggaagctgaatgatctttcgaataggagctttgcggaggtggctcaggtttggtgttcatgatcgggagtttta-ttctgaggggtgttt 41117837  T
Q  118 gttg---gtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttg 214  Q
     |     | |||||||| ||||||||||||  |||||||||||| ||||||  | | ||||| ||| | ||||| ||| |||| |||||| | |||||||    
T  41117836 ttctaaaggggtgagtaatgacgatgggtg--gttggatatcgtttttacaacggttgttttcgtgcatgagtctgttctaggtggtgatatgtattttg 41117739  T
Q  215 gtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacg 277  Q
    ||| ||||||||||||  |||||  ||||||||||||||||||||||||||||||||||||||    
T  41117738 gtgggtgttgtcctcat-ggtgttatttagggtgtttattttcgggtgttccgcctatatacg 41117677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 48098446 - 48098641
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtg--- 114  Q
    ||||||||||||||| |||| |||||||||| ||||||||||||| |||||||||| |||||||||| | ||||||||| |||| |||| |||||||       
T  48098446 gagaggtggtggaagatgaacgatctttcagataggagcttttcggatgtggctcaactttggtgtttaagactgggag-tttattttttaggggtgtat 48098544  T
Q  115 -ttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattt 212  Q
     ||| |||| ||||||||||||||| ||||  || |||||||||| ||||||||| ||||||||||||| ||||  |||||||| ||||| || |||||    
T  48098545 tttctttgggggtgagtagtgacgacgggttgtgatggatatcgtttttacagtggtcgtttttgtgaaagagt--gttttaggtggtgacgtgtattt 48098641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 38637201 - 38636927
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttc 117  Q
    ||||||||||||||||||||||||||||||| || ||||||| |  | | || ||| |||||||||| | || ||||||||||| | |  |||||||||     
T  38637201 gagaggtggtggaagctgaatgatctttcagataagagctttgccgaggcggttcaactttggtgttcaagattgggagttttagtata-aggggtgttt 38637103  T
Q  118 gtt---ggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttg 214  Q
     |    || |||||||||||||||||||||  |||||||||| | ||||||| | | ||||| ||||||||||  |||||||| |||||  | ||||||     
T  38637102 ttctaagggggtgagtagtgacgatgggtg--gttggatatcatttttacagcggttgttttcgtgaaggagtttgttttaggtggtgacatgtattttc 38637005  T
Q  215 gtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgta 293  Q
    ||| ||||||||||| | ||| |  |||| ||||||||||||| ||||||||||||| ||||||||||| | |||||||    
T  38637004 gtgggtgttgtcctcgggggttttatttaaggtgtttattttcaggtgttccgccta-atacggcgcctcttgtttgta 38636927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 34 - 294
Target Start/End: Original strand, 49747657 - 49747917
Alignment:
Q  34 tgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtg--ttcgttggtggtgagta 131  Q
    ||||||||||||||  || |||||||||| |  ||||| |||||||||||  |||| ||| ||||| | ||| ||| |||   ||| || | ||||||||    
T  49747657 tgaatgatctttcatatatgagcttttcggagatggcttagctttggtgtcaaggattggaagttt-attttagagaggttgtttctttaggggtgagta 49747755  T
Q  132 gtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcag 231  Q
    ||||| ||||| | |||||||| |||| |||||| || ||||||| ||||| ||||| |||||||| |||||  |  ||||||||| |||||||||||||    
T  49747756 gtgacaatgggcggtgttggat-tcgtttttacaatggtcgttttcgtgaaagagtctgttttaggtggtgacatgaattttggtgggtgttgtcctcag 49747854  T
Q  232 aggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtat 294  Q
    |||||| ||||| |||||||||||| || |||||||| ||||||||  | |||| ||||||||    
T  49747855 aggtgttttttatggtgtttatttttggatgttccgcatatatacgatgtcttttgtttgtat 49747917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 31050627 - 31050478
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttc 117  Q
    ||||||| |||||||||| ||| || ||| | |||||||||||||| ||||||| ||||| |||||||| | ||||  |||||| |||||||||||||||    
T  31050627 gagaggttgtggaagctgcatgttcattcggttaggagcttttcgattgtggctaagcttgggtgttgaagtctggctgtttta-ttttgaggggtgttc 31050529  T
Q  118 gttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtg 168  Q
     |||| |||||||||||||||||| ||||| ||||| | ||||||||||||    
T  31050528 cttgggggtgagtagtgacgatggatgatggtggatgttgtgtttacagtg 31050478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 19815188 - 19814910
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttc 117  Q
    ||||| ||||||||||| ||||||||||| | ||||| ||||||  |||||||| | |||||||||||||||||| ||| |||||| |||||  ||||||    
T  19815188 gagagatggtggaagctaaatgatctttcggataggaacttttccgatgtggctaaactttggtgttgaggactgagag-tttaatcttgagaagtgttc 19815090  T
Q  118 gttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttagg---cggtgatgtatattttg 214  Q
     |||| ||||||||||||| | || || | ||||||||| | ||||| ||| || |||| ||||||  ||| |||| |||    ||||| || | |||||    
T  19815089 tttgggggtgagtagtgacaacggatggtattggatatcatttttaccgtggtcattttcgtgaagacgtctgtttgaggtactggtgacgtgttttttg 19814990  T
Q  215 gtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcc-tttagtttgta 293  Q
    ||| ||||||||||   | |||||||||| | |||||||||| |||||||| || |||||||  |||| |||||||||||    
T  19814989 gtgggtgttgtccttgaaagtgtcttttatgatgtttatttttgggtgttctgcttatatacaacgccttttagtttgta 19814910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 231
Target Start/End: Original strand, 25753293 - 25753500
Alignment:
Q  26 gtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt---cgttgg 122  Q
    ||||||||||||||||||||| |  || ||||||| | |||||| ||| ||||| |||| |||||||  ||||| ||||||||||||||||   | ||||    
T  25753293 gtggaagctgaatgatctttcggagagaagctttttggatgtggttcaactttgatgttcaggactgaaagttt-aattttgaggggtgtttttctttgg 25753391  T
Q  123 tggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgt 222  Q
     |||||||||||||||||  |||||||||||| ||  |||||||||  | |||| ||||||||||  |||||||| | |||  | |||||||||| ||||    
T  25753392 gggtgagtagtgacgatgaatgatgttggataccgattttacagtggcccttttcgtgaaggagtttgttttaggtgatgacttgtattttggtgggtgt 25753491  T
Q  223 tgtcctcag 231  Q
    |||||||||    
T  25753492 tgtcctcag 25753500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 35341304 - 35341141
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttc 117  Q
    ||||||| |||||||||| ||| || ||||| || |||||||||||||||||||||| ||||||||||| |  |||||||||| ||||||||||||||||    
T  35341304 gagaggttgtggaagctgcatgttcattcagttatgagcttttcgaatgtggctcag-tttggtgttgaagtttgggagtttt-attttgaggggtgttc 35341207  T
Q  118 gttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaagg 184  Q
      ||| ||||||||||||||||||||| |   |||||  |||||||||||| | |||||||| ||||    
T  35341206 tctgg-ggtgagtagtgacgatgggtggttgcggatactgtgtttacagtgtttgtttttgttaagg 35341141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 183
Target Start/End: Original strand, 19673219 - 19673377
Alignment:
Q  24 tggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggt 123  Q
    ||||||||||| |||||| |||  | || || ||||||| |||||||| | |||||||||||||||||| |||||| |||||||||| |||||| ||||     
T  19673219 tggtggaagctaaatgatattttggatatgaacttttcggatgtggctaaactttggtgttgaggactgagagttt-aattttgaggagtgttctttggg 19673317  T
Q  124 ggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaag 183  Q
    ||||||||||||||| || || |||||||||| |  ||||||||| || |||| ||||||    
T  19673318 ggtgagtagtgacgacggatggtgttggatattgcttttacagtggtcattttcgtgaag 19673377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 125 - 277
Target Start/End: Complemental strand, 39420896 - 39420745
Alignment:
Q  125 gtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttg 224  Q
    |||||||||||||| ||||| ||||||||||||| | ||| ||| | ||| | ||| |||||||||||||||  ||||| || |||||||||| |||||     
T  39420896 gtgagtagtgacgacgggtggtgttggatatcgtttatacggtggttgttctcgtgtaggagtcagttttagatggtgacgtgtattttggtg-gtgtta 39420798  T
Q  225 tcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacg 277  Q
    | ||||   |||| ||||| |||||| ||||||||||||||||||||||||||    
T  39420797 tgctcatgagtgttttttatggtgttcattttcgggtgttccgcctatatacg 39420745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 50 - 295
Target Start/End: Complemental strand, 22811096 - 22810864
Alignment:
Q  50 taggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt--cgttggtggtgagtagtgacgatgggtgatg 147  Q
    |||||| ||| || ||||||||||||||||||||| ||||| | | ||||||  ||| || ||| ||  | |||| |||||||||||||||||| ||  |    
T  22811096 taggagttttgcggatgtggctcagctttggtgttcaggacggagggttttatcttttagaggttttttctttgggggtgagtagtgacgatggatg--g 22810999  T
Q  148 ttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggt 247  Q
    | ||||||||| ||||||||| ||| ||| |||||| |||| |||||||| ||||| || |||||||||| |||  ||||||            ||||||    
T  22810998 taggatatcgtttttacagtggtcggtttcgtgaagcagtctgttttaggaggtgacgtgtattttggtgggtgaggtcctc------------tagggt 22810911  T
Q  248 gtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    ||||| |||||| | |||||| |||||||||||||||| |||||||||    
T  22810910 gtttactttcggatattccgcttatatacggcgccttt-gtttgtatt 22810864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 49528187 - 49528282
Alignment:
Q  20 gaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt 116  Q
    ||||||||||||| ||||||||||||| | ||| |||||| || |||||| |||||||||||||| | ||||| ||||||| |||||||||||||||    
T  49528187 gaggtggtggaagatgaatgatctttcggatagaagctttgcggatgtggttcagctttggtgttcaagactgagagtttt-attttgaggggtgtt 49528282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 2825899 - 2826020
Alignment:
Q  19 agaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcg 118  Q
    |||||| |||||||||| ||| || ||| | ||||||||||||||| |||| |||| || |||||||| |  |||||||||| ||||||||||||||||     
T  2825899 agaggttgtggaagctgcatgttcattcggttaggagcttttcgaaggtggttcagtttgggtgttgaagtttgggagtttt-attttgaggggtgttct 2825997  T
Q  119 ttggtggtgagtagtgacgatggg 142  Q
     ||| |||||||||||||||||||    
T  2825998 ctgg-ggtgagtagtgacgatggg 2826020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 295
Target Start/End: Original strand, 28967209 - 28967265
Alignment:
Q  239 ttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||    
T  28967209 ttttagggtgtttattttcaggtgttccgcctatatacagcgcctttcgtttgtatt 28967265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 48098645 - 48098698
Alignment:
Q  244 gggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatttt 297  Q
    ||||||||||||||||||||||||||||||||| ||| |||| |||||||||||    
T  48098645 gggtgtttattttcgggtgttccgcctatatactgcgtcttttgtttgtatttt 48098698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 39420981 - 39420914
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttg 85  Q
    |||||||||||||| |||| |||| |||||| |||||||||||| ||||||||| ||||| |||||||    
T  39420981 gagaggtggtggaaactgattgatatttcagataggagcttttcaaatgtggcttagcttcggtgttg 39420914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 257
Target Start/End: Complemental strand, 53823281 - 53823151
Alignment:
Q  124 ggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgtt 223  Q
    ||||||||||| || |||||| ||| ||||||||| ||||  |||  | |||||||||||||||| |||   || | ||| || |||||||||| |||||    
T  53823281 ggtgagtagtgtcggtgggtggtgtgggatatcgtttttatggtggacatttttgtgaaggagtctgtt---ggtgatgacgtgtattttggtgggtgtt 53823185  T
Q  224 gtcctcagaggtgtcttttagggtgtttattttc 257  Q
     ||||||| ||| | |||||||||||||||||||    
T  53823184 atcctcaggggtattttttagggtgtttattttc 53823151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 53823389 - 53823314
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagc-taggagcttttcgaatgtggctcagctttggtgttgaggactg 92  Q
    ||||||||||||||| ||| ||||||||  |  ||||||||||| | |||||||||||||||||||||||||||||    
T  53823389 gagaggtggtggaagttgattgatctttttggataggagcttttaggatgtggctcagctttggtgttgaggactg 53823314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 176
Target Start/End: Original strand, 8255188 - 8255299
Alignment:
Q  63 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 162  Q
    ||||||||||||||| ||||||  || ||| |||||||| ||||||||| ||||| |||  |||||||||||||||||||   || ||||||  ||||||    
T  8255188 aatgtggctcagcttgggtgttagggtctgtgagtttta-ttttgaggg-tgttctttgtgggtgagtagtgacgatgggatgtggtggatactgtgttt 8255285  T
Q  163 acagtgctcgtttt 176  Q
    |||||||| |||||    
T  8255286 acagtgcttgtttt 8255299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 176
Target Start/End: Original strand, 8268606 - 8268717
Alignment:
Q  63 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 162  Q
    ||||||||||||||| ||||||  || ||| |||||||| ||||||||| ||||| |||  |||||||||||||||||||   || ||||||  ||||||    
T  8268606 aatgtggctcagcttgggtgttagggtctgtgagtttta-ttttgaggg-tgttctttgtgggtgagtagtgacgatgggatgtggtggatactgtgttt 8268703  T
Q  163 acagtgctcgtttt 176  Q
    |||||||| |||||    
T  8268704 acagtgcttgtttt 8268717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 295
Target Start/End: Original strand, 46487621 - 46487670
Alignment:
Q  246 gtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    |||||||||||||| |||||||||||||||||  ||||||||||||||||    
T  46487621 gtgtttattttcggatgttccgcctatatacgatgcctttagtttgtatt 46487670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 299
Target Start/End: Original strand, 35336914 - 35336964
Alignment:
Q  249 tttattttcgggtgttccgcctatatacggcgcctttagtttgtatttttt 299  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||||| |||||    
T  35336914 tttattttcggatgttccgtctatatacggcgccttttgtttgtacttttt 35336964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 43373910 - 43373864
Alignment:
Q  182 aggagtcagttttaggcggtgatgtatattttggtgagtgttgtcct 228  Q
    |||||||||||||||| |||||||| |||||||||| ||||||||||    
T  43373910 aggagtcagttttagggggtgatgtttattttggtgggtgttgtcct 43373864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 295
Target Start/End: Original strand, 42719494 - 42719546
Alignment:
Q  243 agggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    ||||||||||||||| ||| |||||| ||||||||||| |||| |||||||||    
T  42719494 agggtgtttattttcaggttttccgcttatatacggcgtcttttgtttgtatt 42719546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 177
Target Start/End: Complemental strand, 8706061 - 8705952
Alignment:
Q  66 gtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttaca 165  Q
    |||||||||||| ||||||| || ||  |||||||| ||||||||| ||||| |||  |||| ||||||||||||||   || ||||||  |||||||||    
T  8706061 gtggctcagcttgggtgttggggtctaagagtttta-ttttgaggg-tgttctttgtgggtgggtagtgacgatgggcagtggtggatactgtgtttaca 8705964  T
Q  166 gtgctcgttttt 177  Q
    ||||| ||||||    
T  8705963 gtgcttgttttt 8705952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 25754199 - 25754265
Alignment:
Q  228 tcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    |||||||||| ||||| ||||||||||||| | ||||||| ||||||||||||| |||  ||||||||    
T  25754199 tcagaggtgt-ttttatggtgtttattttcagatgttccgtctatatacggcgctttttatttgtatt 25754265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 38930122 - 38930177
Alignment:
Q  239 ttttagggtgtttatttt-cgggtgttccgcctatatacggcgcctttagtttgta 293  Q
    ||||| |||||||||||| |||||||||| |||||||||||| ||||| |||||||    
T  38930122 ttttatggtgtttatttttcgggtgttccacctatatacggctcctttcgtttgta 38930177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 295
Target Start/End: Complemental strand, 35948044 - 35947998
Alignment:
Q  249 tttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    |||||||||||||||||||| |||||| |||| |||| |||||||||    
T  35948044 tttattttcgggtgttccgcttatatatggcgtcttttgtttgtatt 35947998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 276
Target Start/End: Complemental strand, 2061627 - 2061542
Alignment:
Q  191 ttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatac 276  Q
    ||||||| |||||  | ||||||| || |||||| |||||| ||| | |||||| ||||||||| || | ||||||||||||||||    
T  2061627 ttttaggtggtgacttgtattttgatgggtgttgccctcaggggtattttttagtgtgtttattatcagatgttccgcctatatac 2061542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 20464796 - 20464869
Alignment:
Q  110 gggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaag 183  Q
    |||||||  |||| ||||||||||||||||||| | || |||||| ||||||||||| | | |||||| |||||    
T  20464796 gggtgttatttgggggtgagtagtgacgatgggcggtggtggataccgtgtttacagggtttgtttttttgaag 20464869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 293
Target Start/End: Original strand, 19432386 - 19432426
Alignment:
Q  253 ttttcgggtgttccgcctatatacggcgcctttagtttgta 293  Q
    ||||||| ||||||| ||||||||||||||||| |||||||    
T  19432386 ttttcggatgttccgtctatatacggcgccttttgtttgta 19432426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 169
Target Start/End: Original strand, 30964624 - 30964702
Alignment:
Q  89 actgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgc 169  Q
    ||||||||||||| ||||||||| ||||| |||  |||||||||||| |||||| | || || ||||||| ||||||||||    
T  30964624 actgggagtttta-ttttgaggg-tgttctttgtgggtgagtagtgatgatgggcggtggtgaatatcgtatttacagtgc 30964702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 293
Target Start/End: Complemental strand, 43373824 - 43373784
Alignment:
Q  253 ttttcgggtgttccgcctatatacggcgcctttagtttgta 293  Q
    |||||||||||| |||||||||||  |||||||||||||||    
T  43373824 ttttcgggtgtttcgcctatatacaacgcctttagtttgta 43373784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 58240 - 58518
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgagg---ggtg 114  Q
    ||||| || |||||||||||| ||||||| | || ||||||||||||||||||||||||||||||||  |||||| ||| |||||||||||||   | ||    
T  58240 gagagatgatggaagctgaattatctttcggataagagcttttcgaatgtggctcagctttggtgttcgggactgagag-tttaattttgaggagtgttg 58338  T
Q  115 ttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttg 214  Q
    ||| ||||  |||||||||||||| ||||  |||||||||||   |||||| || ||||||| ||||||||||| ||||| || |||||||| || ||||    
T  58339 ttctttgggtgtgagtagtgacgacgggtagtgttggatatcagttttacaatggtcgttttcgtgaaggagtctgtttttggtggtgatgtgtactttg 58438  T
Q  215 g-tgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    | ||| || ||| ||||  ||||| ||||||||| |||||||| ||||||||  |||||||||||||||||| |||| ||||    
T  58439 gctga-tggtgttctcatgggtgt-ttttagggtatttatttttgggtgttctacctatatacggcgccttttgtttctatt 58518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 20 - 295
Target Start/End: Original strand, 4170860 - 4171134
Alignment:
Q  20 gaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgt 119  Q
    ||||||||||||||| ||||||||||  | ||||||||||    ||||||||||||||||||||| ||||||| |||||||| ||| ||||||||||  |    
T  4170860 gaggtggtggaagcttaatgatctttggg-taggagctttggagatgtggctcagctttggtgttaaggactgagagttttacttt-gaggggtgttttt 4170957  T
Q  120 tg---gtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttg-g 215  Q
     |   | |||||||||||||||||| ||  |||||||||| | | |||| || || |||| |||||||||||  ||||||| | ||| |||||||||  |    
T  4170958 agaagggggtgagtagtgacgatggatg--gttggatatcatttatacaatggtcattttcgtgaaggagtctattttaggtgatgacgtatattttttg 4171055  T
Q  216 tgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    || ||||||||||||  | ||| ||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||    
T  4171056 tgggtgttgtcctcaatgatgt-ttttagggtgtttattttcaggtgttccgcctatatacgacgccttttgtttgtatt 4171134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 21 - 295
Target Start/End: Original strand, 37123497 - 37123760
Alignment:
Q  21 aggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgt- 119  Q
    ||||||||||||||| ||||||||||||  | ||||||||||| ||||||||||||||| ||||  |||||| |||||| ||||| ||||||||||| |     
T  37123497 aggtggtggaagctgtatgatctttcagacatgagcttttcga-tgtggctcagctttgatgttctggactgagagttt-aatttggaggggtgttcatc 37123594  T
Q  120 --tggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtg 217  Q
      ||| ||||||||||||| |  |||| ||||||||||||| ||||||||| ||||||| |||||| ||||  |||||   |||||||| ||||||||||    
T  37123595 tttggcggtgagtagtgacaacaggtggtgttggatatcgtttttacagtggtcgttttcgtgaagaagtctattttatatggtgatgtgtattttggtg 37123694  T
Q  218 agtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
     |||||||| |||            ||||||||||||||||||||||||| |||| || | ||||||| |||||||||    
T  37123695 ggtgttgtcttca------------agggtgtttattttcgggtgttccgactatgtaggacgccttttgtttgtatt 37123760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 25 - 295
Target Start/End: Complemental strand, 50519047 - 50518780
Alignment:
Q  25 ggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt---cgttg 121  Q
    ||||||||||||||| |||||  | |||||| |||| || |||||||||||||||||||| |||||  ||| ||| | |||| |||||||||   | |||    
T  50519047 ggtggaagctgaatggtcttttggttaggagttttt-gattgtggctcagctttggtgttcaggacgaggaattt-attttttaggggtgtttttctttg 50518950  T
Q  122 gtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtg 221  Q
    | |||||||||||||||||| |   ||| |||||||| ||||||||| | || |  ||||||||||| |||||||  ||||| || ||||||| || |||    
T  50518949 gaggtgagtagtgacgatggatc--gttagatatcgtttttacagtggtggtatc-gtgaaggagtctgttttagatggtgaggtgtattttgttgggtg 50518853  T
Q  222 ttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    | |||||||  ||||| ||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||    
T  50518852 tggtcctcatgggtgt-ttttagggtgtttattttcgggtgttccgcctatatacgacaccttttgtttgtatt 50518780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 14879549 - 14879708
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt- 116  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||| | ||||||||| | | |||||||||| ||||||||||||||||     
T  14879549 gagaggtggtggaagcttaatgatctttcagataggagcttttcggatgtggctcgggtttggtgttcaagtctgggagttt-aattttgaggggtgttt 14879647  T
Q  117 --cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttt 175  Q
      | || | ||||| ||||||||||| ||| ||||||||||||| ||| ||||| ||||||    
T  14879648 ttctttcggggtgaatagtgacgatgtgtggtgttggatatcgttttttcagtggtcgttt 14879708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 50 - 168
Target Start/End: Complemental strand, 23328284 - 23328167
Alignment:
Q  50 taggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgtt 149  Q
    |||||||||||||||||||||||||||| |||||||| | ||||||||||| |||||||| ||||||| |||| ||||||||||||||||||||| |  |    
T  23328284 taggagcttttcgaatgtggctcagcttgggtgttgaagtctgggagtttt-attttgagtggtgttctttgggggtgagtagtgacgatgggtggttgt 23328186  T
Q  150 ggatatcgtgtttacagtg 168  Q
    |||||| ||| ||||||||    
T  23328185 ggatattgtgcttacagtg 23328167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 45398911 - 45399060
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttc 117  Q
    ||||||| |||||||||| ||| || ||| | || |||||||||||||||||| || ||| |||||||| |  |||||||| || ||||| |||||||||    
T  45398911 gagaggttgtggaagctgcatgttcattcggttatgagcttttcgaatgtggcgcaacttaggtgttgaagtttgggagttcta-ttttgtggggtgttc 45399009  T
Q  118 gttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtg 168  Q
    ||||| |||||||||||||||||| ||||  ||||||| ||||||||||||    
T  45399010 gttgggggtgagtagtgacgatggatgattgtggatattgtgtttacagtg 45399060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 28937681 - 28937427
Alignment:
Q  19 agaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcg 118  Q
    |||| |||||||||||||||||| ||||||  |||||||||| | |||||||||| ||||| |||| ||| || |||||||   |||| |||||||||      
T  28937681 agagatggtggaagctgaatgatgtttcagggaggagctttttggatgtggctca-ctttgatgttcaggtctaggagtttgtttttt-aggggtgtttt 28937584  T
Q  119 tt----ggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttg 214  Q
    ||    || ||||||||||| ||||||||| | ||||||||||| ||||||||| ||  ||| ||||||| ||| |||||||| ||        ||||||    
T  28937583 ttacttggaggtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcactttcgtgaaggggtctgttttaggtgg--------attttg 28937492  T
Q  215 gtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgc 281  Q
    ||| |||||||| |  | ||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  28937491 gtgggtgttgtcattgg-ggtgt-ttttagggtgtttattttcgggtgttccgcttatatacggcgc 28937427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 20 - 168
Target Start/End: Complemental strand, 40023536 - 40023389
Alignment:
Q  20 gaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgt 119  Q
    ||||| |||||||||| ||| || ||| | |||||||||||||||||||||||||||  |||||||  | ||||||||||| ||||||||||| |||| |    
T  40023536 gaggttgtggaagctgcatgttcattcggttaggagcttttcgaatgtggctcagctagggtgttgtagtctgggagtttt-attttgaggggcgttctt 40023438  T
Q  120 tggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtg 168  Q
    | | | |||||||||||||||| || |  |||||| |||||||||||||    
T  40023437 ttgggatgagtagtgacgatggatggttgtggataccgtgtttacagtg 40023389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 63 - 206
Target Start/End: Original strand, 43012536 - 43012677
Alignment:
Q  63 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 162  Q
    ||||||||||||||| ||||||| || || ||||||||||||| ||||| ||||| |||| ||||||||||| ||||||  |  | |||||| |||||||    
T  43012536 aatgtggctcagcttgggtgttggggtctaggagttttaattt-gaggg-tgttctttggaggtgagtagtggcgatggacgggggtggataccgtgttt 43012633  T
Q  163 acagtgctcgtttttgtgaaggagtcagttttaggcggtgatgt 206  Q
    ||| |||| ||||||||||||||||| |||||||  ||||||||    
T  43012634 acaatgcttgtttttgtgaaggagtctgttttagatggtgatgt 43012677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 7104956 - 7105232
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttgg-tgttgaggactgggagttttaattttgaggggtgtt 116  Q
    |||||||||||||||||| |||||  ||| | || ||||||||||||| |||||||| ||| | ||||  ||||||||||||||| |||| |||||||||    
T  7104956 gagaggtggtggaagctgtatgatgcttc-gttatgagcttttcgaatatggctcagtttttgatgttagggactgggagtttta-ttttaaggggtgtt 7105053  T
Q  117 cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggt 216  Q
      || | ||||||||||||||||||||| || ||||||  || |||| |||||| |||||  ||||| |||| |||||||| |||||   || ||||||     
T  7105054 tctttggggtgagtagtgacgatgggtggtggtggatactgtttttatagtgcttgttttcttgaagaagtctgttttaggtggtgac--atgttttggc 7105151  T
Q  217 gagtgttgtcctcagaggtgtcttttagggt-----gtttattttcgggtgttccgcctatatacggcgcctttagtttgta 293  Q
    | || ||||| || |  |||| |||||||||     ||||||||| ||||||||||||| |||| || | ||||||||||||    
T  7105152 gggt-ttgtcttcgggcgtgttttttagggttgggtgtttatttttgggtgttccgcctttataaggtgtctttagtttgta 7105232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 124 - 279
Target Start/End: Complemental strand, 48893214 - 48893060
Alignment:
Q  124 ggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgtt 223  Q
    ||||||||||||||| || |||  |||||||| || ||||| ||  |||||||||| ||||||||  ||||||| |||||  | |||||||||| |||||    
T  48893214 ggtgagtagtgacgacggatgacattggatattgtttttaccgtaatcgtttttgtaaaggagtctcttttaggtggtgacatgtattttggtgggtgtt 48893115  T
Q  224 gtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggc 279  Q
    ||| |||| ||||| |||||  |||||||||||||| |||||| | ||||||||||    
T  48893114 gtcttcaggggtgt-ttttaaagtgtttattttcggatgttcctcttatatacggc 48893060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 292
Target Start/End: Original strand, 14194154 - 14194317
Alignment:
Q  124 ggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgtt 223  Q
    |||||||||||||||||| ||  ||||||||||||  || |||||  || ||| |||| |||||| |||||||| ||||| || |||||||||| ||||     
T  14194154 ggtgagtagtgacgatggatg--gttggatatcgttatt-cagtgg-cgatttcgtgatggagtctgttttaggtggtgacgtgtattttggtgggtgtg 14194249  T
Q  224 gtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgt 292  Q
    |||||||   |||| ||||||| ||||||||||||| ||||||||||||||| ||| ||||| ||||||    
T  14194250 gtcctcatgagtgt-ttttaggatgtttattttcggatgttccgcctatataaggcaccttttgtttgt 14194317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 25647799 - 25648073
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggac-tgggagttttaattttgaggggtgtt 116  Q
    ||||||||||| ||| ||||||||||||| | || |||||||||| | ||||||||| ||||||| | ||||  |||| ||| |  |||| |||||||||    
T  25647799 gagaggtggtgaaagttgaatgatctttcggttatgagcttttcggacgtggctcagttttggtgctcaggaagtgggggttat--tttttaggggtgtt 25647896  T
Q  117 cgt---tggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatatttt 213  Q
      |   ||| |||||||||||| ||||| ||  |||||||||||| ||| ||||| | ||||  |||| |||||  |||||| | |||||  | |  |||    
T  25647897 tttatttgggggtgagtagtgatgatggatg--gttggatatcgttttt-cagtggtggtttc-gtgatggagtatgttttatgtggtgacatgttattt 25647992  T
Q  214 ggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    |||| |||| |||||||   |||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||    
T  25647993 ggtgggtgtggtcctcatgtgtgt-ttttagggtgtttattttcgggtgttccgtctatatactgcgccttttgtttgtatt 25648073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 190 - 295
Target Start/End: Complemental strand, 14280343 - 14280240
Alignment:
Q  190 gttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtt 289  Q
    |||||||| ||||| || |||||| ||| ||||||||||||| | | | ||| || ||||||| ||||||||||||||||||||||||||||||||| ||    
T  14280343 gttttaggtggtgacgtgtattttagtgggtgttgtcctcag-gatat-tttcagagtgtttactttcgggtgttccgcctatatacggcgcctttaatt 14280246  T
Q  290 tgtatt 295  Q
    ||||||    
T  14280245 tgtatt 14280240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 206
Target Start/End: Original strand, 53248061 - 53248200
Alignment:
Q  63 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 162  Q
    |||||||||||| || ||||||| || ||| ||||||| |||||||| | ||||| |||  ||||||||||||||||||| | || ||| || |||||||    
T  53248061 aatgtggctcagtttgggtgttggggtctgagagtttttattttgagag-tgttctttgtgggtgagtagtgacgatgggcggtggtggttaccgtgttt 53248159  T
Q  163 acagtgctcgtttttgtgaaggagtcagttttaggcggtgatgt 206  Q
    |||||||| |||||| |   |||||| |||||||| ||||||||    
T  53248160 acagtgcttgttttttt---ggagtctgttttaggtggtgatgt 53248200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 233 - 297
Target Start/End: Complemental strand, 46358135 - 46358071
Alignment:
Q  233 ggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatttt 297  Q
    ||||||||||| ||||||||||||| |||||| ||||||||||| ||| ||||||||||||||||    
T  46358135 ggtgtcttttaaggtgtttattttcaggtgtttcgcctatatacagcgtctttagtttgtatttt 46358071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 177
Target Start/End: Original strand, 47235826 - 47235971
Alignment:
Q  31 agctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgag 129  Q
    ||||| |||||| ||| | |||| ||| |||||| ||||| ||||||| ||||||| || ||| |||||||| ||||||||| ||||| |||  ||||||    
T  47235826 agctgcatgatccttcggttaggtgctcttcgaaatgtggttcagcttgggtgttggggtctgcgagtttta-ttttgaggg-tgttctttgtgggtgag 47235923  T
Q  130 tagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 177  Q
    ||||||||||||  | || |||||| ||||||||||||||| ||||||    
T  47235924 tagtgacgatggacggtggtggataccgtgtttacagtgcttgttttt 47235971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 14893264 - 14893318
Alignment:
Q  239 ttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgta 293  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||| |||||||    
T  14893264 ttttagggtgtttattttcaggtgttccgcctatatacggcgtcttttgtttgta 14893318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 176
Target Start/End: Original strand, 20611911 - 20612054
Alignment:
Q  31 agctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgag 129  Q
    |||||||||||| ||| | |||| ||| |||||| |||| |||||||| ||||||| || || ||||||||| || |||||| ||||| |||  ||||||    
T  20611911 agctgaatgatccttcggttaggtgctcttcgaaatgtgactcagcttgggtgttg-ggtctaggagtttta-ttctgaggg-tgttctttgtgggtgag 20612007  T
Q  130 tagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttt 176  Q
    ||||||||||||| |||| ||||||  |||||||||||||| |||||    
T  20612008 tagtgacgatgggcgatggtggatactgtgtttacagtgcttgtttt 20612054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 1652628 - 1652569
Alignment:
Q  233 ggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgta 293  Q
    |||||||||  |||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  1652628 ggtgtctttgtgggtgtttattt-cgggtgttccgcctatatacgacgcctttagtttgta 1652569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 230
Target Start/End: Complemental strand, 25594406 - 25594304
Alignment:
Q  126 tgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgt 225  Q
    ||||||||| ||||||||| | ||||||||||| ||| ||||| ||||||| ||||||||||  ||||||||  ||||||| |||| ||||| |||||||    
T  25594406 tgagtagtggcgatgggtggt-ttggatatcgttttttcagtggtcgtttt-gtgaaggagtatgttttaggtagtgatgtttattgtggtgggtgttgt 25594309  T
Q  226 cctca 230  Q
    |||||    
T  25594308 cctca 25594304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 39021245 - 39021094
Alignment:
Q  18 gagaggtggtggaagctgaatgatcttt-cagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtg-t 115  Q
    ||||| |||||| |||||| |||||||| | | || ||| |||||| |||||||| |||||||||||||||||||| ||| ||| ||||||| | ||| |    
T  39021245 gagagatggtggtagctgattgatcttttcggatatgagtttttcggatgtggcttagctttggtgttgaggactgagag-tttcattttgacgcgtgtt 39021147  T
Q  116 tcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtg 168  Q
    || ||||  |||||||||||||||| | |  || ||||||||| |||||||||    
T  39021146 tctttgggtgtgagtagtgacgatgagaggcgtgggatatcgtttttacagtg 39021094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 188
Target Start/End: Complemental strand, 9583972 - 9583852
Alignment:
Q  65 tgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttac 164  Q
    |||||||| |||| ||| ||| || |||||||||||| ||||||||  ||||| |||  |||||||||||||||| || | || ||||||||||||||||    
T  9583972 tgtggctctgcttgggttttggggtctgggagtttta-ttttgagga-tgttctttgc-ggtgagtagtgacgataggcggtggtggatatcgtgtttac 9583876  T
Q  165 agtgctcgtttttgtgaaggagtc 188  Q
     ||||| |||||| ||||||||||    
T  9583875 ggtgcttgtttttttgaaggagtc 9583852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 206
Target Start/End: Original strand, 19176665 - 19176806
Alignment:
Q  63 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 162  Q
    ||||||||||||||| ||||| | || ||||| |||||| ||||||||| ||||| || | |||||||||||||||||| || || ||||||  ||||||    
T  19176665 aatgtggctcagcttgggtgtcggggtctgggtgtttta-ttttgaggg-tgttctttaggggtgagtagtgacgatggatggtggtggatactgtgttt 19176762  T
Q  163 acagtgctcgtttttgtgaaggagtcagttttaggcggtgatgt 206  Q
    || ||||| |||||| |   |||||| |||||||| ||| ||||    
T  19176763 actgtgcttgttttttttttggagtctgttttaggtggttatgt 19176806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 295
Target Start/End: Complemental strand, 33143812 - 33143643
Alignment:
Q  124 ggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgtt 223  Q
    ||||||||||||||| || ||  |||||||||||| | | ||||| | ||||| ||||||||||  |||||||| ||||| || | || |||||  ||||    
T  33143812 ggtgagtagtgacgacggatggggttggatatcgtttgttcagtggtggttttcgtgaaggagtttgttttaggtggtgacgtgttttatggtggatgtt 33143713  T
Q  224 gtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
     |||||   || || |||| |||||||| ||||||||||||||||||||||| | ||||||| | |||||||    
T  33143712 atcctcttgggagtttttt-gggtgttt-ttttcgggtgttccgcctatatatgacgccttttggttgtatt 33143643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 275
Target Start/End: Original strand, 41039463 - 41039527
Alignment:
Q  210 ttttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatata 275  Q
    |||||||| |||||||| |||  ||||| ||||||||||||||||||| |||||||||||||||||    
T  41039463 ttttggtgggtgttgtcttcacgggtgt-ttttagggtgtttattttctggtgttccgcctatata 41039527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 63 - 170
Target Start/End: Complemental strand, 2392426 - 2392321
Alignment:
Q  63 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 162  Q
    ||||||||||||||| ||||||| || || ||||||||| |||  |||  ||||  |||  ||||||||||||||||||| | || |||||| |||||||    
T  2392426 aatgtggctcagcttgggtgttggggtctaggagttttattttgtagg--tgttatttgtgggtgagtagtgacgatgggcggtggtggataccgtgttt 2392329  T
Q  163 acagtgct 170  Q
    ||||||||    
T  2392328 acagtgct 2392321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 63 - 170
Target Start/End: Complemental strand, 2394190 - 2394085
Alignment:
Q  63 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 162  Q
    ||||||||||||||| ||||||| || || ||||||||| |||  |||  ||||  |||  ||||||||||||||||||| | || |||||| |||||||    
T  2394190 aatgtggctcagcttgggtgttggggtctaggagttttattttgtagg--tgttatttgtgggtgagtagtgacgatgggcggtggtggataccgtgttt 2394093  T
Q  163 acagtgct 170  Q
    ||||||||    
T  2394092 acagtgct 2394085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 146 - 278
Target Start/End: Original strand, 12086483 - 12086615
Alignment:
Q  146 tgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagg 245  Q
    ||||| ||||||| ||||||||| |||||||  ||||    || |||||||| |||||||| |||||||||| |||| ||| |  | ||| ||||||| |    
T  12086483 tgttgaatatcgtttttacagtgatcgttttcttgaatacatctgttttaggtggtgatgtttattttggtgggtgtggtcttagggggtatcttttaag 12086582  T
Q  246 gtgtttattttcgggtgttccgcctatatacgg 278  Q
     ||||||||||||  |||||||||| |||||||    
T  12086583 atgtttattttcgaatgttccgcctttatacgg 12086615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 63 - 177
Target Start/End: Complemental strand, 30352359 - 30352249
Alignment:
Q  63 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 162  Q
    ||||||||||||||| ||||||| || || ||||||||   ||| |||| ||||| |||  | ||||||||||||||||||| || |||||| |||||||    
T  30352359 aatgtggctcagcttgggtgttggggtctcggagtttt---ttttaggg-tgttctttgtggatgagtagtgacgatgggtggtggtggataccgtgttt 30352264  T
Q  163 acagtgctcgttttt 177  Q
    ||||| || ||||||    
T  30352263 acagtacttgttttt 30352249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 32010117 - 32010177
Alignment:
Q  235 tgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    ||||||||| ||||||||||||| ||| ||||||||||||||| ||| ||||| |||||||    
T  32010117 tgtcttttaaggtgtttattttcaggtattccgcctatatacgacgcttttaggttgtatt 32010177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 295
Target Start/End: Complemental strand, 14755016 - 14754974
Alignment:
Q  253 ttttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    |||| ||||||||||||||| ||||||||||||||||||||||    
T  14755016 ttttagggtgttccgcctatgtacggcgcctttagtttgtatt 14754974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 1652691 - 1652648
Alignment:
Q  185 agtcagttttaggcggtgatgtatattttggtgagtgttgtcct 228  Q
    ||||||||||||| |||||||| |||||||||| ||||||||||    
T  1652691 agtcagttttagggggtgatgtttattttggtgggtgttgtcct 1652648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 142
Target Start/End: Original strand, 17551113 - 17551190
Alignment:
Q  63 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatggg 142  Q
    |||||||||||| || ||||||| || ||| |||||||| ||||||||| ||||| |||  |||||||||||||||||||    
T  17551113 aatgtggctcagtttgggtgttggggtctgagagtttta-ttttgaggg-tgttctttgtcggtgagtagtgacgatggg 17551190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 34475631 - 34475564
Alignment:
Q  110 gggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 177  Q
    |||||||| |||  ||||||||||||||||||| | || |||||| |||||||||| |||| ||||||    
T  34475631 gggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacattgcttgttttt 34475564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 14755232 - 14755166
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgtt 84  Q
    ||||| ||||||||| ||||||||||||| |  | |||||| | | |||||||||||||||||||||    
T  14755232 gagagatggtggaagttgaatgatctttcggggatgagcttgttggatgtggctcagctttggtgtt 14755166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 25594255 - 25594217
Alignment:
Q  239 ttttagggtgtttattttcgggtgttccgcctatatacg 277  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  25594255 ttttatggtgtttactttcgggtgttccgcctatatacg 25594217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 176
Target Start/End: Complemental strand, 37999125 - 37998971
Alignment:
Q  20 gaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtg-ttcg 118  Q
    ||||||||||||||| | ||||||||  | ||||||||||| | | |||| ||| |||||||||| ||||| ||||  ||||||||| | ||||| ||      
T  37999125 gaggtggtggaagctaattgatcttttggataggagctttttggaggtggatcaactttggtgtttaggac-gggaagtttaattttaatgggtgttttt 37999027  T
Q  119 ttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttt 176  Q
    ||  | |||||| ||||||||| |||  |||||||||||| || |||||| |||||||    
T  37999026 ttttttgtgagtggtgacgatgagtg--gttggatatcgttttaacagtggtcgtttt 37998971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 32010027 - 32010072
Alignment:
Q  170 tcgtttttgtgaaggagtcagttttaggcggtgatgtatattttgg 215  Q
    ||||||| ||||||||||| |||||||| |||||||| ||||||||    
T  32010027 tcgttttcgtgaaggagtctgttttaggtggtgatgtttattttgg 32010072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 175
Target Start/End: Original strand, 45163983 - 45164126
Alignment:
Q  31 agctgaatgatctttcagctaggagcttttcgaa-tgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgag 129  Q
    ||||| |||||| ||| | |||| ||| |||||| ||||||| ||||| ||||||| || || ||||||||| ||||||||| ||||  |||  |||||     
T  45163983 agctgcatgatccttcggttaggtgctcttcgaaatgtggcttagcttgggtgttggggtctaggagtttta-ttttgaggg-tgttatttgtaggtgat 45164080  T
Q  130 tagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttt 175  Q
    ||||||||||||| | || || ||| |||||||||| |||| ||||    
T  45164081 tagtgacgatgggcggtgatgaataccgtgtttacaatgcttgttt 45164126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 27399218 - 27399270
Alignment:
Q  178 gtgaaggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctca 230  Q
    ||||||||| | |||||||| | |||||| |||||||||| ||||||||||||    
T  27399218 gtgaaggagcctgttttaggtgatgatgtttattttggtgggtgttgtcctca 27399270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 295
Target Start/End: Complemental strand, 37998956 - 37998900
Alignment:
Q  239 ttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    ||||| |||||||||||||||   ||||||||||||||||| | ||| |||||||||    
T  37998956 ttttaaggtgtttattttcggacattccgcctatatacggcacattttgtttgtatt 37998900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 20701771 - 20701488
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtg--- 114  Q
    ||||||| ||||||||||||||||||||| | |||||||||||||||||||||||| ||||| |||| | |||| |||| |||  |||| | |||||       
T  20701771 gagaggtagtggaagctgaatgatctttcggataggagcttttcgaatgtggctcaactttgttgttcaagactaggag-tttgtttttaaagggtgttt 20701673  T
Q  115 -ttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatat--- 210  Q
     ||  |||| ||||||||||||||||||||  | ||||||||||| ||||||||| | | ||| ||||| | ||| ||| |||| ||||| || | |       
T  20701672 tttttttgggggtgagtagtgacgatgggtagtattggatatcgtttttacagtggttgctttcgtgaatgggtctgttataggtggtgaagtgttttag 20701573  T
Q  211 --tttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
      |||| || |||||||||||   ||||  |||||| |||||||||| | |||||||||||||||||| |||||||| |||||||||    
T  20701572 ggtttgatgggtgttgtcctcgtgggtg--ttttagtgtgtttatttccaggtgttccgcctatatacagcgccttttgtttgtatt 20701488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 15120565 - 15120293
Alignment:
Q  18 gagaggtggtggaagctgaatgatctttc-agctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt 116  Q
    ||||||||||||||||||  ||||||||  || ||  || |||||| | ||||||   |||||||||||||||||| | |||| |||||| |||| ||||    
T  15120565 gagaggtggtggaagctggttgatctttttagatattagattttcggacgtggctttactttggtgttgaggactgcgggttt-aatttttagggatgtt 15120467  T
Q  117 cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggt 216  Q
      |||  |||||||||||||||||| || |||||||||| ||    | |||  |  |||||||||| ||||| |||||||| |||||||| |||||||||    
T  15120466 tcttgagggtgagtagtgacgatggatggtgttggatattgt----aaagtcgtt-tttttgtgaatgagtctgttttaggtggtgatgtgtattttggt 15120372  T
Q  217 gagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    |  |||||||||||  | ||| |||||||||||||||| || | ||||| ||||| ||||| || ||||||||||||||    
T  15120371 ggatgttgtcctcatggatgttttttagggtgtttattgtcagatgttctgcctacatacgtcgtctttagtttgtatt 15120293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 177
Target Start/End: Complemental strand, 3880562 - 3880404
Alignment:
Q  22 ggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtg----ttc 117  Q
    ||||||||||| ||||| ||||||| | || |||||||| | ||||||||||||||||||||| | |||| |||| |||||||||||||||||    |||    
T  3880562 ggtggtggaagttgaataatctttcggatatgagctttttggatgtggctcagctttggtgttcaagacttggag-tttaattttgaggggtgttttttc 3880464  T
Q  118 gttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgttttt 177  Q
     | || |||||||||||||||  | || ||||||||||||| |||| |||| ||||||||    
T  3880463 ttagggggtgagtagtgacgacagatggtgttggatatcgtttttatagtggtcgttttt 3880404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 17278215 - 17278153
Alignment:
Q  233 ggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    ||||||||||| | ||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  17278215 ggtgtcttttatgatgtttattttcgggtgttccgcctatatacgacgcctttagattgtatt 17278153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 56 - 165
Target Start/End: Original strand, 13423603 - 13423716
Alignment:
Q  56 cttttcgaatgtggctcagctttggtgttgaggactgggagttttaattt---tgaggggtg-ttcgttggtggtgagtagtgacgatgggtgatgttgg 151  Q
    ||||||| ||||||||||||||||||||||||||||  |||||| | |||   ||||||||| ||| |||| |||||||||||| |||||||| ||| ||    
T  13423603 cttttcggatgtggctcagctttggtgttgaggacttagagtttaattttgactgaggggtgtttcattgggggtgagtagtgaagatgggtgttgtggg 13423702  T
Q  152 atatcgtgtttaca 165  Q
    || |||| ||||||    
T  13423703 atgtcgtttttaca 13423716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 295
Target Start/End: Original strand, 6860348 - 6860423
Alignment:
Q  221 gttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccg--cctatatacggcgcctttagtttgtatt 295  Q
    ||||||| || |||||| |||||||||||||||||| ||||||||||  ||||||||||||| |||| |||||||||    
T  6860348 gttgtccgcataggtgt-ttttagggtgtttatttttgggtgttccgcccctatatacggcgtcttttgtttgtatt 6860423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 32935305 - 32935099
Alignment:
Q  20 gaggtggtggaagctgaatgatctttcagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgt 119  Q
    |||||||||||||||| ||||||||||    | ||| |||||| ||||  ||||||||||||| |||| |||| ||| ||| |||| ||||| ||||  |    
T  32935305 gaggtggtggaagctgcatgatctttcgaacatgagtttttcggatgtaactcagctttggtgatgagcactgtgag-tttcatttagagggatgttttt 32935207  T
Q  120 tggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtgag 219  Q
    ||| ||| |||||||| |||||||| |  || ||||||| |||  || |  |||||| || ||||||||  ||||||| |||| ||| |||||||||| |    
T  32935206 tgg-ggtcagtagtgatgatgggtggttatgtatatcgt-ttttgagggggcgttttcgttaaggagtctattttaggtggtggtgtttattttggtggg 32935109  T
Q  220 tgttgtcctc 229  Q
    ||||||||||    
T  32935108 tgttgtcctc 32935099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 177
Target Start/End: Original strand, 10541993 - 10542105
Alignment:
Q  63 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 162  Q
    ||||||||||||||| ||||||| || |||| |||||||  ||||  |||| ||| |||  ||||||||||||||||||| | || |||||| ||| |||    
T  10541993 aatgtggctcagcttgggtgttggggtctggaagtttta--tttggagggtattctttgtgggtgagtagtgacgatgggcggtggtggataccgtattt 10542090  T
Q  163 acagtgctcgttttt 177  Q
    | |||||| ||||||    
T  10542091 aaagtgcttgttttt 10542105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 170
Target Start/End: Original strand, 14663238 - 14663343
Alignment:
Q  63 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 162  Q
    |||||||||| |||| | ||||| ||  ||||||||||| ||||||||  ||||| |||  ||||||||||||||||||| | || ||||||| ||||||    
T  14663238 aatgtggctcggcttggatgttggggtttgggagtttta-ttttgagga-tgttctttgcgggtgagtagtgacgatgggcggtggtggatattgtgttt 14663335  T
Q  163 acagtgct 170  Q
    ||||||||    
T  14663336 acagtgct 14663343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 297
Target Start/End: Complemental strand, 26215826 - 26215711
Alignment:
Q  182 aggagtcagttttaggcggtgatgtatattttggtgagtgttgtcctcagaggtgtcttttagggtgtttattttcgggtgttccgcctatatacggcgc 281  Q
    |||| ||||||||||| |||| ||| |||||||||| |||||| || | | ||| |||||   ||||||| ||||| |||| ||||| ||||||| | ||    
T  26215826 aggaatcagttttagggggtgttgtttattttggtgggtgttgaccgctggggtatctttattggtgtttgttttcaggtggtccgcatatatacagtgc 26215727  T
Q  282 ctttagtttgtatttt 297  Q
    ||||| ||||||||||    
T  26215726 ctttaatttgtatttt 26215711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 297
Target Start/End: Complemental strand, 3880359 - 3880301
Alignment:
Q  239 ttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatttt 297  Q
    ||||||||||||||||||  |||||||||| |||||||||  ||||| |||||||||||    
T  3880359 ttttagggtgtttattttttggtgttccgcttatatacggaaccttttgtttgtatttt 3880301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 293
Target Start/End: Original strand, 12794465 - 12794505
Alignment:
Q  253 ttttcgggtgttccgcctatatacggcgcctttagtttgta 293  Q
    ||||||| ||||||| |||||||||||||||||||||||||    
T  12794465 ttttcggatgttccgtctatatacggcgcctttagtttgta 12794505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 276
Target Start/End: Original strand, 20500282 - 20500323
Alignment:
Q  234 gtgtcttttagggtgtttattttcgggtgttccgcctatatac 276  Q
    |||||||||| |||||||||||| |||||||||||||||||||    
T  20500282 gtgtcttttatggtgtttatttt-gggtgttccgcctatatac 20500323  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 293
Target Start/End: Complemental strand, 26534464 - 26534424
Alignment:
Q  253 ttttcgggtgttccgcctatatacggcgcctttagtttgta 293  Q
    ||||| ||||||||||||||||||| ||||||| |||||||    
T  26534464 ttttcaggtgttccgcctatatacgacgccttttgtttgta 26534424  T

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Target: scaffold1384 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 119 - 290
Target Start/End: Complemental strand, 1522 - 1347
Alignment:
Q  119 ttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatattttggtga 218  Q
    |||| ||| ||||||||||| | ||| ||||||||||||| ||||||||| | ||| | ||| |||||||||||||||| ||||| || |||||| |||     
T  1522 ttgggggtcagtagtgacgacgtgtggtgttggatatcgtttttacagtggttgttctcgtgtaggagtcagttttaggtggtgacgtgtatttttgtgg 1423  T
Q  219 g---tgttgtcctcagaggtgtcttttagggtgttta-ttttcgggtgttccgcctatatacggcgcctttagttt 290  Q
    |   ||||||||| || ||||| ||||| |||||||| ||||||||||||| ||||||||||||||||||| ||||    
T  1422 gttttgttgtccttaggggtgttttttatggtgtttatttttcgggtgttctgcctatatacggcgccttttgttt 1347  T

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Target: scaffold0200 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 19496 - 19687
Alignment:
Q  18 gagaggtggtggaagctgaatgatcttt-cagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt 116  Q
    ||||| ||||||||||||||| |||||| | |  |||||||||||||||||||||| |||||||||||||||| |  ||  |||| |||||| |||| ||    
T  19496 gagagttggtggaagctgaataatcttttcggacaggagcttttcgaatgtggctctgctttggtgttgaggatt--gaagtttatttttgaagggtatt 19593  T
Q  117 cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatatttt 213  Q
      |||| || |||||||||||||| |||  |||||||||||| |||| || | ||||||||| ||||||||  |||||||| |||||||| ||||||    
T  19594 tcttgg-ggcgagtagtgacgatgtgtg--gttggatatcgtttttatagaggtcgtttttgagaaggagtttgttttaggtggtgatgtgtatttt 19687  T

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Target: scaffold0119 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 42106 - 41915
Alignment:
Q  18 gagaggtggtggaagctgaatgatcttt-cagctaggagcttttcgaatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgtt 116  Q
    ||||| ||||||||||||||| |||||| | | ||||||||||||||||||||||| |||||||||||||||| |  ||  |||| |||| | |||| ||    
T  42106 gagagttggtggaagctgaataatcttttcggataggagcttttcgaatgtggctctgctttggtgttgaggatt--gaagtttatttttaaagggtatt 42009  T
Q  117 cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcggtgatgtatatttt 213  Q
      |||| || ||||||||||||||||||  |||||||||||| |||| || | ||||||  | |||||| |  |||||||| |||||||| ||||||    
T  42008 tcttgg-ggcgagtagtgacgatgggtg--gttggatatcgtttttatagaggtcgtttccgagaaggaatttgttttaggtggtgatgtgtatttt 41915  T

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Target: scaffold1613 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 746 - 686
Alignment:
Q  235 tgtcttttagggtgtttattttcgggtgttccgcctatatacggcgcctttagtttgtatt 295  Q
    ||||||||| |||||||||||||||||||||| | |||||||| || ||||||||||||||    
T  746 tgtcttttatggtgtttattttcgggtgttccacatatatacgacgtctttagtttgtatt 686  T

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Target: scaffold1613; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 230
Target Start/End: Complemental strand, 916 - 790
Alignment:
Q  102 attttgaggggtgtt-cgttggtggtgagtagtgacgatgggtgatgttggatatcgtgtttacagtgctcgtttttgtgaaggagtcagttttaggcgg 200  Q
    |||| |||||||||| |||||| | ||||||||||||||| ||| |  |||||||||| ||| ||||| || ||   ||||| ||||| |||||||| ||    
T  916 atttagaggggtgttacgttgg-gatgagtagtgacgatgagtggttatggatatcgt-tttccagtgatcattcc-gtgaaagagtctgttttaggtgg 820  T
Q  201 tgatgtatattttggtgagtgttgtcctca 230  Q
    |||||| ||||||||||  |||||||||||    
T  819 tgatgtttattttggtgtatgttgtcctca 790  T

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Target: scaffold0343 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 63 - 183
Target Start/End: Original strand, 5867 - 5985
Alignment:
Q  63 aatgtggctcagctttggtgttgaggactgggagttttaattttgaggggtgttcgttggtggtgagtagtgacgatgggtgatgttggatatcgtgttt 162  Q
    ||||||||||||||| ||||||| |  |||||||||||| ||||||||| ||||  |||  |||||||||||| |||||| | || |||||| | |||||    
T  5867 aatgtggctcagcttgggtgttgggatctgggagtttta-ttttgaggg-tgttttttgtgggtgagtagtgatgatgggaggtggtggataccatgttt 5964  T
Q  163 acagtgctcgtttttgtgaag 183  Q
    || ||||| |||||| |||||    
T  5965 acggtgcttgtttttttgaag 5985  T

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