View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15424_low_2 (Length: 762)

Name: NF15424_low_2
Description: NF15424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15424_low_2
NF15424_low_2
[»] chr4 (11 HSPs)
chr4 (382-745)||(22076185-22076548)
chr4 (15-304)||(22077046-22077336)
chr4 (316-386)||(22076617-22076687)
chr4 (176-282)||(30507190-30507296)
chr4 (176-251)||(36118575-36118650)
chr4 (176-235)||(15735026-15735085)
chr4 (185-251)||(37746848-37746914)
chr4 (176-239)||(24396861-24396924)
chr4 (185-239)||(52468212-52468266)
chr4 (187-236)||(2135447-2135496)
chr4 (664-749)||(22058949-22059034)
[»] chr7 (5 HSPs)
chr7 (178-293)||(17800341-17800456)
chr7 (230-303)||(38971183-38971257)
chr7 (176-239)||(7398372-7398435)
chr7 (186-257)||(26917810-26917881)
chr7 (176-257)||(23858976-23859057)
[»] chr3 (8 HSPs)
chr3 (176-304)||(8420185-8420313)
chr3 (176-304)||(49392950-49393078)
chr3 (176-251)||(52374570-52374645)
chr3 (176-257)||(26279446-26279527)
chr3 (189-288)||(789813-789910)
chr3 (176-239)||(29598032-29598095)
chr3 (189-244)||(42453331-42453386)
chr3 (176-253)||(54574946-54575023)
[»] scaffold0022 (2 HSPs)
scaffold0022 (176-293)||(39950-40067)
scaffold0022 (176-293)||(138010-138127)
[»] chr8 (10 HSPs)
chr8 (178-293)||(11290051-11290166)
chr8 (176-267)||(7944641-7944732)
chr8 (176-304)||(34789981-34790109)
chr8 (177-251)||(15078669-15078743)
chr8 (187-284)||(5973235-5973332)
chr8 (186-251)||(25561635-25561700)
chr8 (188-251)||(38009267-38009330)
chr8 (185-251)||(15167541-15167607)
chr8 (176-239)||(41677292-41677355)
chr8 (176-229)||(8102845-8102898)
[»] chr5 (4 HSPs)
chr5 (176-306)||(10407312-10407445)
chr5 (186-244)||(34425819-34425877)
chr5 (186-239)||(2024766-2024819)
chr5 (176-239)||(40794441-40794504)
[»] chr1 (5 HSPs)
chr1 (176-254)||(43235888-43235966)
chr1 (176-251)||(39134841-39134916)
chr1 (235-304)||(45758370-45758439)
chr1 (185-259)||(5533223-5533297)
chr1 (186-251)||(26803869-26803934)
[»] scaffold1320 (1 HSPs)
scaffold1320 (177-251)||(1265-1339)
[»] chr2 (5 HSPs)
chr2 (176-251)||(29694292-29694367)
chr2 (176-251)||(37182578-37182653)
chr2 (177-239)||(12134160-12134222)
chr2 (186-251)||(11952735-11952800)
chr2 (176-251)||(38400706-38400781)
[»] scaffold0227 (1 HSPs)
scaffold0227 (224-261)||(15927-15964)
[»] scaffold0018 (1 HSPs)
scaffold0018 (190-251)||(173643-173704)


Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 382 - 745
Target Start/End: Complemental strand, 22076548 - 22076185
Alignment:
Q  382 aattataactacctgcatccaaatccactggaaaatgagttttcatgagctnnnnnnnnnnnngggatggattttacattaatcctaact----gaaagt 477  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||            |  |||||||||||||||||||||  |    ||| ||    
T  22076548 aattataactacctgcatccaaatccactggaaaatgagttttcatgagctaaaaatttaaaagaaatggattttacattaatcctatatatgtgaatgt 22076449  T
Q  478 tacacattacccagcatacagacattcaactaatttggttacatacaactaagctctcactttatcattgatgccccaccataatatcattgtcagatat 577  Q
    ||||||||||| ||  ||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22076448 tacacattacctag--taca--catccaactaatttggttacatacaactaagctctcactttatcattgatgccccaccataatatcattgtcagatat 22076353  T
Q  578 gtcaccatgagaacttcacaacattcaggaatcaaactcctgtatctatcttcaattatgtaacaccttattttataaggttacagatcacaattatagg 677  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  22076352 gtcaccatgagaacttcacaacattcaggaatcaaactcctgtatctatcttcaatgatgtaacaccttattttataaggttacaaatcacaattatagg 22076253  T
Q  678 tttataacaaaacctttcaccaacatgtcattctatcaaagcctttataaaatcttaatccttagtat 745  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22076252 tttataacaaaacctttcaccaacatgtcattctatcaaagcctttataaaatcttaatccttagtat 22076185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 15 - 304
Target Start/End: Complemental strand, 22077336 - 22077046
Alignment:
Q  15 agaaacaacaaattatggaataacactacagaaacacaaaactccgcgtttacacgtgctcaatctatgttacatgactggaagtcagcccgtgtgattt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22077336 agaaacaacaaattatggaataacactacagaaacacaaaactccgcgtttacacgtgctcaatctatgttacatgacgggaagtcagcccgtgtgattt 22077237  T
Q  115 ctcatatagcaggtacagaacagcctgattttagcattataaatcggaacaaaacaattctaa-aaaatatccacctaacaccaaaagcatgaggactca 213  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22077236 ctcatatagcaggtacagaacagcctgttgttagcattataaatcggaacaaaacaattctaaaaaaatatccacctaacaccaaaagcatgaggactca 22077137  T
Q  214 gttctaacacgcctaaaacaagacaatagaaaaggaaagtgaaaaccttgggagcagtggggtagtacttagtagcactagtgggctataa 304  Q
     |||||| | | ||||||| |||||| ||||||| |||||| |||||||||||| |||||||||||| |||||||||||| ||||||||||    
T  22077136 attctaataggtctaaaaccagacaacagaaaagaaaagtggaaaccttgggagtagtggggtagtatttagtagcactactgggctataa 22077046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 316 - 386
Target Start/End: Complemental strand, 22076687 - 22076617
Alignment:
Q  316 atttcttacggataaattgggaaaatattctacatatttatcagaaaaaattcaatacttttctttaatta 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22076687 atttcttacggataaattgggaaaatattctacatatttatcagaaaaaattcaatacttttctttaatta 22076617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 176 - 282
Target Start/End: Original strand, 30507190 - 30507296
Alignment:
Q  176 aaaaaatatccacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaagtgaaaaccttgggagcagtgggg 275  Q
    |||||| ||||||||||||||||||||| ||||||||| |||| | | |||||||||||||||| | |||||||||||| |||||| ||||| ||||  |    
T  30507190 aaaaaacatccacctaacaccaaaagcaagaggactcaattcttataggcctaaaacaagacaacataaaaggaaagtggaaacctggggagtagtgaag 30507289  T
Q  276 tagtact 282  Q
    |||||||    
T  30507290 tagtact 30507296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 176 - 251
Target Start/End: Original strand, 36118575 - 36118650
Alignment:
Q  176 aaaaaatatccacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaa 251  Q
    |||||| ||||||||||||||||||||| || ||| || |||||| | |||||||| |||||||||||| ||||||    
T  36118575 aaaaaacatccacctaacaccaaaagcaagatgacccaattctaataggcctaaaagaagacaatagaagaggaaa 36118650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 15735085 - 15735026
Alignment:
Q  176 aaaaaatatccacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaag 235  Q
    |||||| ||||||||||||||||||||| || ||| || |||||||| ||||||||||||    
T  15735085 aaaaaacatccacctaacaccaaaagcaagaagacccaattctaacaggcctaaaacaag 15735026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 37746848 - 37746914
Alignment:
Q  185 ccacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaa 251  Q
    ||||||||||||||||||| || ||| || |||||| | |||||||||||||||| |||| ||||||    
T  37746848 ccacctaacaccaaaagcaagatgacccaattctaataggcctaaaacaagacaacagaagaggaaa 37746914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 24396924 - 24396861
Alignment:
Q  176 aaaaaatatccacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaa 239  Q
    |||||| ||||| ||||||||||||||| ||| ||||| |||||| | || |||||||||||||    
T  24396924 aaaaaaaatccatctaacaccaaaagcaagagaactcaattctaatatgcttaaaacaagacaa 24396861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 52468266 - 52468212
Alignment:
Q  185 ccacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaa 239  Q
    ||||||||| |||||| || ||||||||| |||||| | ||||||||||||||||    
T  52468266 ccacctaacgccaaaaacaagaggactcaattctaataggcctaaaacaagacaa 52468212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 2135447 - 2135496
Alignment:
Q  187 acctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaaga 236  Q
    ||||||||||||||||| |||||| || |||||| | |||||||||||||    
T  2135447 acctaacaccaaaagcaagaggacccaattctaataagcctaaaacaaga 2135496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 664 - 749
Target Start/End: Original strand, 22058949 - 22059034
Alignment:
Q  664 atcacaattataggtttataacaaaacctttcaccaacatgtcattctatcaaagcctttataaaatcttaatccttagtattatc 749  Q
    ||||||||||  |||  |||||||| ||||||||| | |||||||  | || |||||| ||||||| | |||||||||||||||||    
T  22058949 atcacaattaagggtccataacaaagcctttcacctaaatgtcatattctccaagcctctataaaagcctaatccttagtattatc 22059034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 178 - 293
Target Start/End: Original strand, 17800341 - 17800456
Alignment:
Q  178 aaaatatccacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaagtgaaaaccttgggagcagtggggta 277  Q
    |||| ||||||||||||||||||||| |||||| || |||||| | |||||||||||||||| |||||||||||||| |||||| ||||| |||||| ||    
T  17800341 aaaacatccacctaacaccaaaagcaagaggacccaattctaataggcctaaaacaagacaacagaaaaggaaagtggaaacctggggagtagtgggata 17800440  T
Q  278 gtacttagtagcacta 293  Q
    ||||||| ||| ||||    
T  17800441 gtacttaatagtacta 17800456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 230 - 303
Target Start/End: Complemental strand, 38971257 - 38971183
Alignment:
Q  230 aacaagacaatagaaaa-ggaaagtgaaaaccttgggagcagtggggtagtacttagtagcactagtgggctata 303  Q
    ||||||||||||||||| |||||||| |||||| ||||| |||| ||||||||||||||| | || |||||||||    
T  38971257 aacaagacaatagaaaaaggaaagtggaaacctggggagtagtgaggtagtacttagtagtattactgggctata 38971183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 7398435 - 7398372
Alignment:
Q  176 aaaaaatatccacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaa 239  Q
    |||||| |||||| |||||||||||||| |||||| || |||||| | ||||||||||||||||    
T  7398435 aaaaaacatccacgtaacaccaaaagcaagaggacccaattctaataggcctaaaacaagacaa 7398372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 186 - 257
Target Start/End: Original strand, 26917810 - 26917881
Alignment:
Q  186 cacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaagtgaaa 257  Q
    |||||||||||||||||| || ||| || |||||| | |||||||||||||||| |||| |||||| |||||    
T  26917810 cacctaacaccaaaagcaagaagacccaattctaataagcctaaaacaagacaacagaagaggaaaatgaaa 26917881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 257
Target Start/End: Complemental strand, 23859057 - 23858976
Alignment:
Q  176 aaaaaatatccacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaagtgaaa 257  Q
    |||||| | ||||||||||||||| ||| |||||| || |||||| | ||||||||||||| ||  ||| |||||| |||||    
T  23859057 aaaaaacacccacctaacaccaaatgcaagaggacccaattctaataggcctaaaacaagataacggaagaggaaaatgaaa 23858976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 9e-26; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 176 - 304
Target Start/End: Complemental strand, 8420313 - 8420185
Alignment:
Q  176 aaaaaatatccacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaagtgaaaaccttgggagcagtgggg 275  Q
    |||||| | ||||||||||||||||||| ||| || || |||||| | |||||||| ||||||| |||||||||||||| |||||| | ||| |||||||    
T  8420313 aaaaaacacccacctaacaccaaaagcaagagaacccaattctaatatgcctaaaataagacaacagaaaaggaaagtggaaacctggagagtagtgggg 8420214  T
Q  276 tagtacttagtagcactagtgggctataa 304  Q
    |||||||||||||  ||| ||||||||||    
T  8420213 tagtacttagtagtcctattgggctataa 8420185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 176 - 304
Target Start/End: Complemental strand, 49393078 - 49392950
Alignment:
Q  176 aaaaaatatccacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaagtgaaaaccttgggagcagtgggg 275  Q
    ||||||||  |||||||||||||||| | ||||||  | |||||| | ||||||||||||||||  ||||||||| ||| |||||| ||||| |||||||    
T  49393078 aaaaaatactcacctaacaccaaaagtaagaggacctaattctaataggcctaaaacaagacaacggaaaaggaatgtggaaacctggggaggagtgggg 49392979  T
Q  276 tagtacttagtagcactagtgggctataa 304  Q
     |||||||||||| |||| ||||||||||    
T  49392978 cagtacttagtagtactactgggctataa 49392950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 52374645 - 52374570
Alignment:
Q  176 aaaaaatatccacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaa 251  Q
    |||||| | ||||||||||||||||||| ||||||||| |||||| | |||||||||||||||| |||||||||||    
T  52374645 aaaaaacacccacctaacaccaaaagcaagaggactcaattctaataggcctaaaacaagacaacagaaaaggaaa 52374570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 257
Target Start/End: Complemental strand, 26279527 - 26279446
Alignment:
Q  176 aaaaaatatccacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaagtgaaa 257  Q
    |||||| | |||||||||||||||||||  | ||| || || ||| | ||||||||||||||||||||| |||||| |||||    
T  26279527 aaaaaacacccacctaacaccaaaagcaacatgacccaattttaataggcctaaaacaagacaatagaagaggaaaatgaaa 26279446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 288
Target Start/End: Complemental strand, 789910 - 789813
Alignment:
Q  189 ctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaagtgaaaaccttgggagcagtggggtagtacttagtag 288  Q
    ||||||| ||||| | |||||| || |||||| | ||||||||||||||||  ||||||||||||| ||| | |||||| | |||| |||||||||||||    
T  789910 ctaacacaaaaagtaagaggacccaattctaa-aggcctaaaacaagacaaccgaaaaggaaagtggaaa-cgtgggagtaatgggatagtacttagtag 789813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 29598095 - 29598032
Alignment:
Q  176 aaaaaatatccacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaa 239  Q
    |||||| ||||||||||||||||||||| || |||  | |||||| | ||||||||||||||||    
T  29598095 aaaaaacatccacctaacaccaaaagcaagatgacctaattctaataggcctaaaacaagacaa 29598032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 42453386 - 42453331
Alignment:
Q  189 ctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaa 244  Q
    ||||||||||||| | ||||||||| |||||| | |||||||||||||||| ||||    
T  42453386 ctaacaccaaaagtaagaggactcaattctaataggcctaaaacaagacaacagaa 42453331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 253
Target Start/End: Original strand, 54574946 - 54575023
Alignment:
Q  176 aaaaaatatccacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaagt 253  Q
    |||||| | |||||||||| |||||| | || |||||| |||||| | ||||||||||| |||| | |||||||||||    
T  54574946 aaaaaacacccacctaacaacaaaagtaagatgactcaattctaatatgcctaaaacaaaacaacaaaaaaggaaagt 54575023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 176 - 293
Target Start/End: Complemental strand, 40067 - 39950
Alignment:
Q  176 aaaaaatatccacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaagtgaaaaccttgggagcagtgggg 275  Q
    |||||| ||||||||||||| ||||||| |||||| || |||||| | |||||||||||||||| |||||| ||||||| |||||| ||||  ||||| |    
T  40067 aaaaaacatccacctaacacaaaaagcaagaggacccaattctaataggcctaaaacaagacaacagaaaaagaaagtggaaacctggggaatagtggag 39968  T
Q  276 tagtacttagtagcacta 293  Q
    ||||||||||||| ||||    
T  39967 tagtacttagtagtacta 39950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 176 - 293
Target Start/End: Complemental strand, 138127 - 138010
Alignment:
Q  176 aaaaaatatccacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaagtgaaaaccttgggagcagtgggg 275  Q
    |||||| ||||||||||||| ||||||| |||||| || |||||| | |||||||||||||||| |||||| ||||||| |||||| ||||  ||||| |    
T  138127 aaaaaacatccacctaacacaaaaagcaagaggacccaattctaataggcctaaaacaagacaacagaaaaagaaagtggaaacctggggaatagtggag 138028  T
Q  276 tagtacttagtagcacta 293  Q
    ||||||||||||| ||||    
T  138027 tagtacttagtagtacta 138010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 8e-23; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 178 - 293
Target Start/End: Complemental strand, 11290166 - 11290051
Alignment:
Q  178 aaaatatccacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaagtgaaaaccttgggagcagtggggta 277  Q
    |||| |||||||||| ||||||||||  ||||| || |||||| | |||||||||||||||| |||||||||||||| |||| | ||||| |||||| ||    
T  11290166 aaaacatccacctaataccaaaagcaacaggacccaattctaataggcctaaaacaagacaacagaaaaggaaagtggaaacgtggggagaagtgggata 11290067  T
Q  278 gtacttagtagcacta 293  Q
    ||||||||||| ||||    
T  11290066 gtacttagtagtacta 11290051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 176 - 267
Target Start/End: Original strand, 7944641 - 7944732
Alignment:
Q  176 aaaaaatatccacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaagtgaaaaccttgggag 267  Q
    |||||| | ||||||||||||||||||| |||||| || || ||| | ||||||||||||||||||||||||||||||| |||||| |||||    
T  7944641 aaaaaacacccacctaacaccaaaagcaagaggacacaattttaataggcctaaaacaagacaatagaaaaggaaagtggaaacctggggag 7944732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 176 - 304
Target Start/End: Original strand, 34789981 - 34790109
Alignment:
Q  176 aaaaaatatccacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaagtgaaaaccttgggagcagtgggg 275  Q
    |||||| | ||||||||||||||||| | || ||| || |||||| | ||||||||  |||||| | |||||||||||||||||||  |||| |||||||    
T  34789981 aaaaaacacccacctaacaccaaaagtaagatgacccaattctaatatgcctaaaattagacaacataaaaggaaagtgaaaacctaaggagtagtgggg 34790080  T
Q  276 tagtacttagtagcactagtgggctataa 304  Q
     |||||||||||  |||| ||||||||||    
T  34790081 cagtacttagtactactattgggctataa 34790109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 15078743 - 15078669
Alignment:
Q  177 aaaaatatccacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaa 251  Q
    ||||| || |||||||||||||||| | |||||| || |||||||| |||||||||||||||| |||| ||||||    
T  15078743 aaaaaaattcacctaacaccaaaagtaagaggacccaattctaacaggcctaaaacaagacaacagaagaggaaa 15078669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 187 - 284
Target Start/End: Original strand, 5973235 - 5973332
Alignment:
Q  187 acctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaagtgaaaaccttgggagcagtggggtagtactta 284  Q
    ||||||||||||||||| || ||  || |||||| |  ||||||||||||||| ||||||| |||||| ||||||  |||  ||||||||||||||||    
T  5973235 acctaacaccaaaagcaagatgatccaattctaatagacctaaaacaagacaacagaaaagaaaagtggaaacctgaggaatagtggggtagtactta 5973332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 25561635 - 25561700
Alignment:
Q  186 cacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaa 251  Q
    |||||||||||||||||| |||||| || |||||| | |||||||||||||||| |||| ||||||    
T  25561635 cacctaacaccaaaagcaagaggacccaattctaataggcctaaaacaagacaacagaataggaaa 25561700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 188 - 251
Target Start/End: Original strand, 38009267 - 38009330
Alignment:
Q  188 cctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaa 251  Q
    ||||||||||||||||  || |||||||||||| | |||||||||||||||| |||| ||||||    
T  38009267 cctaacaccaaaagcaaaagaactcagttctaataggcctaaaacaagacaacagaagaggaaa 38009330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 15167541 - 15167607
Alignment:
Q  185 ccacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaa 251  Q
    ||||||||||||||||| | |||||| || |||||| | |||||||||||||||| |||| ||||||    
T  15167541 ccacctaacaccaaaagtaagaggacccaattctaataggcctaaaacaagacaacagaagaggaaa 15167607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 239
Target Start/End: Original strand, 41677292 - 41677355
Alignment:
Q  176 aaaaaatatccacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaa 239  Q
    |||||| | ||||||||||||||||||| |||||| |  |||||| | ||||||||||||||||    
T  41677292 aaaaaacacccacctaacaccaaaagcaagaggacccgattctaataggcctaaaacaagacaa 41677355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 8102898 - 8102845
Alignment:
Q  176 aaaaaatatccacctaacaccaaaagcatgaggactcagttctaacacgcctaa 229  Q
    |||||| ||||||||||||||||||||| |||||| || |||||| | ||||||    
T  8102898 aaaaaacatccacctaacaccaaaagcaagaggacccaattctaataggcctaa 8102845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 5e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 176 - 306
Target Start/End: Complemental strand, 10407445 - 10407312
Alignment:
Q  176 aaaaaatatccacctaacaccaaaag---catgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaagtgaaaaccttgggagcagtg 272  Q
    |||||| || || |||||||||||||   || |||||| || |||||| | |||||||||||||||| |||||||||||||| ||||||  | || ||||    
T  10407445 aaaaaacattcatctaacaccaaaaggagcaagaggacccaattctaataggcctaaaacaagacaacagaaaaggaaagtggaaacctgagaagtagtg 10407346  T
Q  273 gggtagtacttagtagcactagtgggctataaat 306  Q
    ||| |||||||||||| |||| ||| ||||||||    
T  10407345 gggcagtacttagtagtactactggactataaat 10407312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 34425877 - 34425819
Alignment:
Q  186 cacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaa 244  Q
    |||||||||||||||||| ||||||||| |||||| | |||||||||||||||| ||||    
T  34425877 cacctaacaccaaaagcaagaggactcaattctaataggcctaaaacaagacaacagaa 34425819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 2024766 - 2024819
Alignment:
Q  186 cacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaa 239  Q
    |||||||||||||||||| ||||||||| |||||| | ||||||||||||||||    
T  2024766 cacctaacaccaaaagcaagaggactcaattctaatatgcctaaaacaagacaa 2024819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 239
Target Start/End: Original strand, 40794441 - 40794504
Alignment:
Q  176 aaaaaatatccacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaa 239  Q
    |||||| ||| ||||||||||||||| | |||||| || |||||| | ||||||||||||||||    
T  40794441 aaaaaacatcaacctaacaccaaaagtaagaggacccaattctaataagcctaaaacaagacaa 40794504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 176 - 254
Target Start/End: Original strand, 43235888 - 43235966
Alignment:
Q  176 aaaaaatatccacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaagtg 254  Q
    |||||| ||| |||||||||||||||||  |||||||| |||||| | |||||| |||| |||||||||||||||||||    
T  43235888 aaaaaacatcaacctaacaccaaaagcaataggactcaattctaataggcctaatacaaaacaatagaaaaggaaagtg 43235966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 176 - 251
Target Start/End: Original strand, 39134841 - 39134916
Alignment:
Q  176 aaaaaatatccacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaa 251  Q
    |||||| | ||||||||||||||||||| |||||| || |||||| | || ||||||||||||| |||| ||||||    
T  39134841 aaaaaacacccacctaacaccaaaagcaagaggacccaattctaataggcttaaaacaagacaacagaagaggaaa 39134916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 45758439 - 45758370
Alignment:
Q  235 gacaatagaaaaggaaagtgaaaaccttgggagcagtggggtagtacttagtagcactagtgggctataa 304  Q
    ||||| |||||||||||||||||||||  |||| |  ||||||||||||||||| |||| ||| ||||||    
T  45758439 gacaacagaaaaggaaagtgaaaacctgtggagtatgggggtagtacttagtagtactactggactataa 45758370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 185 - 259
Target Start/End: Complemental strand, 5533297 - 5533223
Alignment:
Q  185 ccacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaagtgaaaac 259  Q
    |||||||||| |||||||| |||||  || |||||| | || |||||||||||||  ||||| ||||||||||||    
T  5533297 ccacctaacatcaaaagcaagaggatccaattctaataggcgtaaaacaagacaacggaaaaagaaagtgaaaac 5533223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 251
Target Start/End: Complemental strand, 26803934 - 26803869
Alignment:
Q  186 cacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaa 251  Q
    |||||||||||||||||| ||  ||||| |||||| | | |||||||||||||| |||| ||||||    
T  26803934 cacctaacaccaaaagcaagataactcaattctaataggactaaaacaagacaacagaagaggaaa 26803869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1320 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 1339 - 1265
Alignment:
Q  177 aaaaatatccacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaa 251  Q
    ||||| || |||||||||||||||| | |||||| || |||||||| |||||||||||||||| |||| ||||||    
T  1339 aaaaaaattcacctaacaccaaaagtaagaggacccaattctaacaggcctaaaacaagacaacagaagaggaaa 1265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 29694367 - 29694292
Alignment:
Q  176 aaaaaatatccacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaa 251  Q
    |||||| | ||||||||||||||||||| |||||| || |||||| | | |||||||||||||| |||| ||||||    
T  29694367 aaaaaacacccacctaacaccaaaagcaagaggacccaattctaataggtctaaaacaagacaacagaagaggaaa 29694292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 37182653 - 37182578
Alignment:
Q  176 aaaaaatatccacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaa 251  Q
    |||||| | |||||||||| |||||||| || ||| || |||||| | ||||||||||||||||||||| ||||||    
T  37182653 aaaaaacacccacctaacagcaaaagcaagatgacccaattctaataggcctaaaacaagacaatagaagaggaaa 37182578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 12134160 - 12134222
Alignment:
Q  177 aaaaatatccacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaa 239  Q
    ||||| || |||||||||||||||||| ||| ||||| |||||| | ||||||||||||||||    
T  12134160 aaaaacatacacctaacaccaaaagcaagagaactcaattctaataggcctaaaacaagacaa 12134222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 11952735 - 11952800
Alignment:
Q  186 cacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaa 251  Q
    ||||||||||| ||| || ||||||||| |||||| | ||||||||||||||||| ||| ||||||    
T  11952735 cacctaacacctaaaacaagaggactcaattctaataggcctaaaacaagacaatggaagaggaaa 11952800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 38400781 - 38400706
Alignment:
Q  176 aaaaaatatccacctaacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaa 251  Q
    |||||| | ||||||||||||||||||| || ||| |  |||||| | |||||||||||||||| |||| ||||||    
T  38400781 aaaaaacacccacctaacaccaaaagcaagatgaccctattctaataggcctaaaacaagacaacagaacaggaaa 38400706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 261
Target Start/End: Complemental strand, 15964 - 15927
Alignment:
Q  224 gcctaaaacaagacaatagaaaaggaaagtgaaaacct 261  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  15964 gcctaaaacaagacaacagaaaaggaaagtggaaacct 15927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 173643 - 173704
Alignment:
Q  190 taacaccaaaagcatgaggactcagttctaacacgcctaaaacaagacaatagaaaaggaaa 251  Q
    |||||||||||||| |||| |||| |||||| | ||||||||| |||||| |||| ||||||    
T  173643 taacaccaaaagcaagaggtctcaattctaataggcctaaaactagacaacagaagaggaaa 173704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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