View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15424_low_20 (Length: 325)

Name: NF15424_low_20
Description: NF15424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15424_low_20
NF15424_low_20
[»] chr3 (4 HSPs)
chr3 (1-311)||(43092902-43093215)
chr3 (79-119)||(36354325-36354365)
chr3 (8-42)||(36354229-36354263)
chr3 (127-161)||(36354392-36354426)
[»] chr4 (2 HSPs)
chr4 (2-42)||(33841764-33841804)
chr4 (79-119)||(33841866-33841906)
[»] chr7 (4 HSPs)
chr7 (2-41)||(29607169-29607208)
chr7 (2-41)||(29745959-29745998)
chr7 (2-42)||(1193989-1194029)
chr7 (7-39)||(33396357-33396389)
[»] chr8 (1 HSPs)
chr8 (79-121)||(44517724-44517766)
[»] chr2 (2 HSPs)
chr2 (79-119)||(6591124-6591164)
chr2 (6-38)||(36758677-36758709)
[»] chr1 (1 HSPs)
chr1 (2-39)||(44239273-44239310)
[»] scaffold0007 (1 HSPs)
scaffold0007 (2-42)||(246305-246345)


Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 43092902 - 43093215
Alignment:
Q  1 ttaaggatcctctccatttgttaaagtaaatggagtatacaagagaaagataaa-acaaaaaagatatagtggatgttttcattaattattgtatactct 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43092902 ttaaggatcctctccatttgttaaagtaaatggagtatacaagagaaagataaacacaaaaaagatatagtggatgttttcattaattattgtatactct 43093001  T
Q  100 tttcaagattttttgtgtct--atcattcgagaattgtaaatggggaggatctcaactcaaaatgtttgatatatatgtcaagagatcaaccatatgtat 197  Q
    |||||| | |||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43093002 tttcaaaaatttttgtgtctttatcattcgagaattttaaatggggaggatctcaactcaaaatgtttgatatatatgtcaagagatcaaccatatgtat 43093101  T
Q  198 ataaacgataagaggctaaatgagacctgaatttcttgccaagaaaaagaatctccagtagaatagtacacggaattattgccaactttgtcatctgaat 297  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43093102 ataaacgataagaggctaaatgagacctgaatttctttccaagaaaaagaatctccagtagaatagtacacggaattattgccaactttgtcatctgaat 43093201  T
Q  298 gcatatgtaaaaga 311  Q
    ||||||||||||||    
T  43093202 gcatatgtaaaaga 43093215  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 36354325 - 36354365
Alignment:
Q  79 tcattaattattgtatactcttttcaagattttttgtgtct 119  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  36354325 tcattaattattgtatactattttcaagattttttgtgtct 36354365  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 36354229 - 36354263
Alignment:
Q  8 tcctctccatttgttaaagtaaatggagtatacaa 42  Q
    ||||||||||||||||||||||||||| |||||||    
T  36354229 tcctctccatttgttaaagtaaatggaatatacaa 36354263  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 161
Target Start/End: Original strand, 36354392 - 36354426
Alignment:
Q  127 gagaattgtaaatggggaggatctcaactcaaaat 161  Q
    ||||||||||||||| |||||||||||||||||||    
T  36354392 gagaattgtaaatggagaggatctcaactcaaaat 36354426  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 33841764 - 33841804
Alignment:
Q  2 taaggatcctctccatttgttaaagtaaatggagtatacaa 42  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  33841764 taaggatcctctccatttgttaaagtaaatggagtatacaa 33841804  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 33841866 - 33841906
Alignment:
Q  79 tcattaattattgtatactcttttcaagattttttgtgtct 119  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  33841866 tcattaattattgtatactcttttcaagattttttgtgtct 33841906  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 29607208 - 29607169
Alignment:
Q  2 taaggatcctctccatttgttaaagtaaatggagtataca 41  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  29607208 taaggatcctctccatttgttaaagtaaatggagtataca 29607169  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 29745959 - 29745998
Alignment:
Q  2 taaggatcctctccatttgttaaagtaaatggagtataca 41  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  29745959 taaggatcctctccatttgttaaagtaaatggagtataca 29745998  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 1194029 - 1193989
Alignment:
Q  2 taaggatcctctccatttgttaaagtaaatggagtatacaa 42  Q
    |||||||||||| ||||||| |||||||||||| |||||||    
T  1194029 taaggatcctcttcatttgtcaaagtaaatggattatacaa 1193989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 33396357 - 33396389
Alignment:
Q  7 atcctctccatttgttaaagtaaatggagtata 39  Q
    ||||||||||||||||||| |||||||||||||    
T  33396357 atcctctccatttgttaaaataaatggagtata 33396389  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 44517724 - 44517766
Alignment:
Q  79 tcattaattattgtatactcttttcaagattttttgtgtctat 121  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  44517724 tcattaattattgtatacacttttcaagattttttgtgtctat 44517766  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 6591124 - 6591164
Alignment:
Q  79 tcattaattattgtatactcttttcaagattttttgtgtct 119  Q
    ||||||| ||||||||| |||||||||||||||||||||||    
T  6591124 tcattaactattgtatattcttttcaagattttttgtgtct 6591164  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 36758677 - 36758709
Alignment:
Q  6 gatcctctccatttgttaaagtaaatggagtat 38  Q
    |||||||||||||||| ||||||||||||||||    
T  36758677 gatcctctccatttgtcaaagtaaatggagtat 36758709  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 44239310 - 44239273
Alignment:
Q  2 taaggatcctctccatttgttaaagtaaatggagtata 39  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  44239310 taaggatcctctccatttgtcaaattaaatggagtata 44239273  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 246345 - 246305
Alignment:
Q  2 taaggatcctctccatttgttaaagtaaatggagtatacaa 42  Q
    |||||||||||||||||| | ||| ||||||||||||||||    
T  246345 taaggatcctctccatttatcaaaataaatggagtatacaa 246305  T

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