View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15424_low_23 (Length: 318)
Name: NF15424_low_23
Description: NF15424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15424_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 184 - 302
Target Start/End: Complemental strand, 20215562 - 20215444
Alignment:
| Q |
184 |
gctatcacgcgaatttctttgaaccttgctgcgttctgaacttgattgttgatttgttttggattctgttttggtatcacttgagatcgttgcggttttg |
283 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
20215562 |
gctatcacgcgaatttctttgaatcttgctgcgttctgaacttgattgttgatttgttttggattctgttttggtaccacttgagatcgttgcggttttg |
20215463 |
T |
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| Q |
284 |
gttgtgttcttgttgaatt |
302 |
Q |
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||||||||||||||||||| |
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| T |
20215462 |
gttgtgttcttgttgaatt |
20215444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 184 - 302
Target Start/End: Complemental strand, 22109585 - 22109467
Alignment:
| Q |
184 |
gctatcacgcgaatttctttgaaccttgctgcgttctgaacttgattgttgatttgttttggattctgttttggtatcacttgagatcgttgcggttttg |
283 |
Q |
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||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
22109585 |
gctatcacgcgaatttctttgaatcttgctgcgttctgatcttgattgttgatttgttttggattctgttttggtaccacttgagatcgttgtggttttg |
22109486 |
T |
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| Q |
284 |
gttgtgttcttgttgaatt |
302 |
Q |
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||||||||||||||||||| |
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| T |
22109485 |
gttgtgttcttgttgaatt |
22109467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 184 - 302
Target Start/End: Complemental strand, 31584599 - 31584481
Alignment:
| Q |
184 |
gctatcacgcgaatttctttgaaccttgctgcgttctgaacttgattgttgatttgttttggattctgttttggtatcacttgagatcgttgcggttttg |
283 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
31584599 |
gctatcacgcgaatttctttgaatcttgctgcgttctgaacttgattgttgatttgttttggattctgttttggtaccacttgagatcgttgtggttttg |
31584500 |
T |
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| Q |
284 |
gttgtgttcttgttgaatt |
302 |
Q |
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||||||||||||||||||| |
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| T |
31584499 |
gttgtgttcttgttgaatt |
31584481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 184 - 302
Target Start/End: Original strand, 21533694 - 21533812
Alignment:
| Q |
184 |
gctatcacgcgaatttctttgaaccttgctgcgttctgaacttgattgttgatttgttttggattctgttttggtatcacttgagatcgttgcggttttg |
283 |
Q |
| |
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|||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
21533694 |
gctatcgcgcgaatttctttgaatcttgctgcgttctgagcttgattgttgatttgttttggattctgttttggtaccacttgagatcgttgcggttttg |
21533793 |
T |
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| Q |
284 |
gttgtgttcttgttgaatt |
302 |
Q |
| |
|
||||||||||||||||||| |
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| T |
21533794 |
gttgtgttcttgttgaatt |
21533812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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