View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15424_low_24 (Length: 314)
Name: NF15424_low_24
Description: NF15424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15424_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 45454579 - 45454392
Alignment:
| Q |
19 |
catacggtcagattttccggcctgataactttgtttttggacagtccggtgccggaaacaactgggcgaaaggtcactatacagaaggagctgagttgat |
118 |
Q |
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| T |
45454579 |
catacggtcagattttccggcctgataactttgtttttggacagtccggtgccggaaacaactgggcgaaaggtcactatacagaaggagctgagttgat |
45454480 |
T |
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| Q |
119 |
tgattcggtgcttgacgttgtcaggaaggaggctgagaattgtgattgtcttcaaggtattctttcttccgatttctgcttctaactg |
206 |
Q |
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| T |
45454479 |
tgattcggtgcttgatgttgtcaggaaggaggctgagaattgtgattgtcttcaaggtattctttcttccgatttctgcttctaactg |
45454392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 179
Target Start/End: Complemental strand, 38178912 - 38178775
Alignment:
| Q |
42 |
gataactttgtttttggacagtccggtgccggaaacaactgggcgaaaggtcactatacagaaggagctgagttgattgattcggtgcttgacgttgtca |
141 |
Q |
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| T |
38178912 |
gataacttcgttttcggtcagtccggtgccggaaataattgggcgaaaggtcattacaccgaaggcgctgagttgattgattccgttttggatgttgtga |
38178813 |
T |
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| Q |
142 |
ggaaggaggctgagaattgtgattgtcttcaaggtatt |
179 |
Q |
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| T |
38178812 |
ggaaagaggctgagaattgcgattgcttgcaaggtatt |
38178775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 166
Target Start/End: Complemental strand, 5923134 - 5922989
Alignment:
| Q |
21 |
tacggtcagattttccggcctgataactttgtttttggacagtccggtgccggaaacaactgggcgaaaggtcactatacagaaggagctgagttgattg |
120 |
Q |
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| T |
5923134 |
tacggtcagatctttagaccggataactttgtgtttggtcagagtggtgctggtaataactgggctaaagggcattatactgaaggcgctgagcttattg |
5923035 |
T |
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| Q |
121 |
attcggtgcttgacgttgtcaggaaggaggctgagaattgtgattg |
166 |
Q |
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|||| || ||||| ||||| ||||| || ||||||||||||||||| |
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| T |
5923034 |
attctgttcttgatgttgttaggaaagaagctgagaattgtgattg |
5922989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 5530725 - 5530813
Alignment:
| Q |
78 |
aactgggcgaaaggtcactatacagaaggagctgagttgattgattcggtgcttgacgttgtcaggaaggaggctgagaattgtgattg |
166 |
Q |
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| T |
5530725 |
aactgggctaaagggcattatactgaaggcgctgagcttattgattctgttcttgatgttgttaggaaagaagctgagaattgtgattg |
5530813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 154
Target Start/End: Complemental strand, 5936543 - 5936410
Alignment:
| Q |
21 |
tacggtcagattttccggcctgataactttgtttttggacagtccggtgccggaaacaactgggcgaaaggtcactatacagaaggagctgagttgattg |
120 |
Q |
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||||||||||| || | || ||||||||||| ||||||||| ||||| || || |||||||| ||||| || || || ||||| |||||| | |||| |
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| T |
5936543 |
tacggtcagatctttagaccggataactttgtctttggacagagtggtgctggtaataactgggctaaaggacattacactgaaggcgctgagcttattg |
5936444 |
T |
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| Q |
121 |
attcggtgcttgacgttgtcaggaaggaggctga |
154 |
Q |
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|||| || ||||| ||||| ||||| || ||||| |
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| T |
5936443 |
attctgttcttgatgttgttaggaaagaagctga |
5936410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 21 - 177
Target Start/End: Original strand, 34839808 - 34839964
Alignment:
| Q |
21 |
tacggtcagattttccggcctgataactttgtttttggacagtccggtgccggaaacaactgggcgaaaggtcactatacagaaggagctgagttgattg |
120 |
Q |
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||||||||||| ||||| ||||||||||| ||||| || |||||||| ||||| ||||| |||||||||||||| || || ||||| ||||| | |||| |
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| T |
34839808 |
tacggtcagatcttccgtcctgataacttcgttttcggtcagtccggcgccggtaacaattgggcgaaaggtcattacactgaaggcgctgaacttattg |
34839907 |
T |
|
| Q |
121 |
attcggtgcttgacgttgtcaggaaggaggctgagaattgtgattgtcttcaaggta |
177 |
Q |
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|||| || || || ||||| | || || ||||||||||| |||||||||||||||| |
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| T |
34839908 |
attcagttctcgatgttgttcgtaaagaagctgagaattgcgattgtcttcaaggta |
34839964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 166
Target Start/End: Original strand, 45319355 - 45319494
Alignment:
| Q |
27 |
cagattttccggcctgataactttgtttttggacagtccggtgccggaaacaactgggcgaaaggtcactatacagaaggagctgagttgattgattcgg |
126 |
Q |
| |
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||||||||||| || || |||||||| ||||||||||| |||||||||||||| | || || ||||| || || || || || ||| | ||||| | | |
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| T |
45319355 |
cagattttccgaccagacaactttgtatttggacagtctggtgccggaaacaatttcgccaagggtcattacactgagggtgccgagctcattgactttg |
45319454 |
T |
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| Q |
127 |
tgcttgacgttgtcaggaaggaggctgagaattgtgattg |
166 |
Q |
| |
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| ||||| ||||| |||||||||| ||||||||||||||| |
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| T |
45319455 |
ttcttgatgttgtaaggaaggaggttgagaattgtgattg |
45319494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 166
Target Start/End: Complemental strand, 11734291 - 11734149
Alignment:
| Q |
24 |
ggtcagattttccggcctgataactttgtttttggacagtccggtgccggaaacaactgggcgaaaggtcactatacagaaggagctgagttgattgatt |
123 |
Q |
| |
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|||||||| || || |||||||| ||||| || || ||||| ||||| || || || ||||| |||||||| ||||| ||||| |||||| | ||||||| |
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| T |
11734291 |
ggtcagatctttcgtcctgataattttgtgttcggtcagtctggtgctgggaataattgggctaaaggtcattataccgaaggcgctgagcttattgatt |
11734192 |
T |
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| Q |
124 |
cggtgcttgacgttgtcaggaaggaggctgagaattgtgattg |
166 |
Q |
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| T |
11734191 |
ctgttcttgatgttgttcgtaaagaagctgagaattgtgattg |
11734149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 166
Target Start/End: Complemental strand, 53148268 - 53148141
Alignment:
| Q |
39 |
cctgataactttgtttttggacagtccggtgccggaaacaactgggcgaaaggtcactatacagaaggagctgagttgattgattcggtgcttgacgttg |
138 |
Q |
| |
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|||||||| || || |||||||| || ||||| || || || ||||| |||||||| ||||| ||||| |||||||||||||| || || ||||| |||| |
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| T |
53148268 |
cctgataatttcgtgtttggacaatctggtgctggtaataattgggccaaaggtcattataccgaaggtgctgagttgattgactctgttcttgatgttg |
53148169 |
T |
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| Q |
139 |
tcaggaaggaggctgagaattgtgattg |
166 |
Q |
| |
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| | || || || |||||||||||||| |
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| T |
53148168 |
ttcgtaaagaagcagagaattgtgattg |
53148141 |
T |
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