View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15424_low_25 (Length: 311)
Name: NF15424_low_25
Description: NF15424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15424_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 39088592 - 39088287
Alignment:
| Q |
1 |
ccgttcctccgttgtacattgcccttgcttcgtccgatgcaacctgcacattgttacccttacattagatttagatgaatgaaaaaatcatagtattgct |
100 |
Q |
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| T |
39088592 |
ccgttcctccgttgtacattgcccttgcttcgtccgaagcaacctgcacattattacccttacattagatttagatgaatgaaaaaatcatagtattgct |
39088493 |
T |
|
| Q |
101 |
taca-----aaagagtatagtgttttgcattaaaaaagttatagctgacccgtccaattgcttcccacaatgaagcattgaatgaagcaacggtagtgat |
195 |
Q |
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| T |
39088492 |
taaattaaaaaagagtatagtgttttgcattaaaaaagttatagctgacccgtccaattgcttcccacaaggaagcattgaatgaagcaacggtagtgat |
39088393 |
T |
|
| Q |
196 |
gacttgagggaagctagtggcagctgggaattggccagcaaacttagttcctggtcccacatttgaaactccatgaagagcctctgaccaccactcatag |
295 |
Q |
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| T |
39088392 |
gacttgagggaagctagtggcagctgggaattggccagcaaacttagttcctggtcccacatttgaaactccatgaagagcctctgaccaccactcatag |
39088293 |
T |
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| Q |
296 |
cctttg |
301 |
Q |
| |
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|||||| |
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| T |
39088292 |
cctttg |
39088287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 143 - 296
Target Start/End: Original strand, 44720905 - 44721058
Alignment:
| Q |
143 |
acccgtccaattgcttcccacaatgaagcattgaatgaagcaacggtagtgatgacttgagggaagctagtggcagctgggaattggccagcaaacttag |
242 |
Q |
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| T |
44720905 |
acccgtccaatagcctcccacaaagaagcattaaaagaagcagcggttgtgataacttgaggaaaactagtagcagcagggaacacaccaccaaatctag |
44721004 |
T |
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| Q |
243 |
ttcctggtcccacatttgaaactccatgaagagcctctgaccaccactcatagc |
296 |
Q |
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| T |
44721005 |
tacctggacccacatttgaaacaccatgaagtgcctccgaccaccactcatagc |
44721058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 299
Target Start/End: Complemental strand, 13298056 - 13297929
Alignment:
| Q |
172 |
attgaatgaagcaacggtagtgatgacttgagggaagctagtggcagctgggaattggccagcaaacttagttcctggtcccacatttgaaactccatga |
271 |
Q |
| |
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|||||| |||||| |||| ||||| |||||||||||||||||||| || | ||| ||| |||| ||||| ||||| |||||||| ||||| ||||| |
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| T |
13298056 |
attgaaagaagcagcggtggtgataacttgagggaagctagtggcggcggagaaggccccaccaaatttagtacctgggcccacattagaaacaccatgt |
13297957 |
T |
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| Q |
272 |
agagcctctgaccaccactcatagcctt |
299 |
Q |
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| ||| || |||||||||||||| |||| |
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| T |
13297956 |
aaagcttccgaccaccactcataacctt |
13297929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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