View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15424_low_28 (Length: 280)
Name: NF15424_low_28
Description: NF15424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15424_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 267
Target Start/End: Original strand, 47522569 - 47522825
Alignment:
| Q |
11 |
caaaggttgggaatgtaaaggttggtcgatttattgttgcaatttaaccataactgattatcttcaaacctatcaattcgagaatctgttttccaagcga |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47522569 |
caaaggttgggaatgtaaaggttggtcgatttattgttgcaatttaaccataactgattatcttcaaacctatcaattcgagaatctgttttccaagcga |
47522668 |
T |
|
| Q |
111 |
aactcgcccattgctcatgctgttgggttttgggattatcactcttttataactgccgcggcggttttcgagccattgggttttggtaccactgggaata |
210 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47522669 |
aactcgcccattgctcatgctgttgggttttgggattatcactcttttataactgccgcggcggttttcgagccattgggttttggtaccactgggaata |
47522768 |
T |
|
| Q |
211 |
agactttgaagatgatggagattgccgcatttcttggtcacgttggtagcaaaacct |
267 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47522769 |
agactttgaagatgatggagattgccgcatttcttggtcacgttggtagcaaaacct |
47522825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 12 - 267
Target Start/End: Complemental strand, 6896925 - 6896670
Alignment:
| Q |
12 |
aaaggttgggaatgtaaaggttggtcgatttattgttgcaatttaaccataactgattatcttcaaacctatcaattcgagaatctgttttccaagcgaa |
111 |
Q |
| |
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||||| |||||||||||||| ||||| || |||||||| |||||||| |||||||||||| |||||||||||||||| |||||||||||||| || | | |
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| T |
6896925 |
aaaggatgggaatgtaaaggatggtcaatatattgttgtaatttaacaataactgattattttcaaacctatcaatttgagaatctgttttcaaaaagga |
6896826 |
T |
|
| Q |
112 |
actcgcccattgctcatgctgttgggttttgggattatcactcttttataactgccgcggcggttttcgagccattgggttttggtaccactgggaataa |
211 |
Q |
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| | || |||||||||||||||||||||||||||||||| |||||||| | ||| || | |||| ||||| |||||||||||||| ||||| ||||| |
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| T |
6896825 |
atactccaattgctcatgctgttgggttttgggattatcattcttttattaatgcagcttctctttttgagcctttgggttttggtactactggtaataa |
6896726 |
T |
|
| Q |
212 |
gactttgaagatgatggagattgccgcatttcttggtcacgttggtagcaaaacct |
267 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| || |||||||| |||||||||| |
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| T |
6896725 |
gactacacagatgatggagattgccgcttttctcggacacgttggaagcaaaacct |
6896670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 267
Target Start/End: Original strand, 26714896 - 26715133
Alignment:
| Q |
27 |
aaaggttggtcgatttattgttgcaatttaaccataactgattatcttcaaacctatcaattcgagaatctgttttccaagcgaaactcgcccattgctc |
126 |
Q |
| |
|
||||||||||||||||||| || |||||||| |||||||||||| ||||||||||||||||||||||| ||||||| |||| ||||||| || |||| |
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| T |
26714896 |
aaaggttggtcgatttattatttaaatttaacgataactgattattttcaaacctatcaattcgagaatttgttttcaaagcaaaactcgttgatagctc |
26714995 |
T |
|
| Q |
127 |
atgctgttgggttttgggattatcactcttttataactgccgcggcggttttcgagccattgggttttggtaccactgggaataagactttgaagatgat |
226 |
Q |
| |
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| |||||| |||| ||||||||| ||| ||||||| || | | |||| || ||||||||||||||||| ||||||||||| | ||| |||||| |
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| T |
26714996 |
a---tgttggttttttggattatcattctattataaccaccacatcactttttgatccattgggttttggtactactgggaataatagtttacagatgac |
26715092 |
T |
|
| Q |
227 |
ggagattgccgcatttcttggtcacgttggtagcaaaacct |
267 |
Q |
| |
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|||||| || ||||||| ||| ||| | |||||||||||| |
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| T |
26715093 |
ggagatcgctgcatttcatgggcacatcagtagcaaaacct |
26715133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 267
Target Start/End: Original strand, 26984635 - 26984872
Alignment:
| Q |
27 |
aaaggttggtcgatttattgttgcaatttaaccataactgattatcttcaaacctatcaattcgagaatctgttttccaagcgaaactcgcccattgctc |
126 |
Q |
| |
|
||||||||||||||||||| || |||||||| |||||||||||| ||||||||||||||||||||||| ||||||| |||| ||||||| || |||| |
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| T |
26984635 |
aaaggttggtcgatttattatttaaatttaacgataactgattattttcaaacctatcaattcgagaatttgttttcaaagcaaaactcgttgatagctc |
26984734 |
T |
|
| Q |
127 |
atgctgttgggttttgggattatcactcttttataactgccgcggcggttttcgagccattgggttttggtaccactgggaataagactttgaagatgat |
226 |
Q |
| |
|
| |||||| |||| ||||||||| ||| ||||||| || | | |||| || ||||||||||||||||| ||||||||||| | ||| |||||| |
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| T |
26984735 |
a---tgttggttttttggattatcattctattataaccaccacatcactttttgatccattgggttttggtactactgggaataatagtttacagatgac |
26984831 |
T |
|
| Q |
227 |
ggagattgccgcatttcttggtcacgttggtagcaaaacct |
267 |
Q |
| |
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|||||| || ||||||| ||| ||| | |||||||||||| |
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| T |
26984832 |
ggagatcgctgcatttcatgggcacatcagtagcaaaacct |
26984872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 209
Target Start/End: Complemental strand, 26714689 - 26714492
Alignment:
| Q |
12 |
aaaggttgggaatgtaaaggttggtcgatttattgttgcaa-tttaaccataactgattatcttcaaacctatcaattcgagaatctgttttccaagcga |
110 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| | |||| || |||||| ||||| | |||| ||||||| |||||||| |||||||| ||| ||| | |
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|
| T |
26714689 |
aaaggctgggaatgtaaaggttggttgatttttcgttgtaattttaacgataaccggttattttcaaacatatcaattagagaatcttattttgaagtaa |
26714590 |
T |
|
| Q |
111 |
aactcgcccattgctcatgctgttgggttttgggattatcactcttttataactgccgcggcggttttcgagccattgggttttggtaccactgggaat |
209 |
Q |
| |
|
||||||| || ||||||| ||| |||||| ||| ||| |||||||||| ||||| || ||||||||||||| ||||||||||| |||| |||| |
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| T |
26714589 |
aactcgctgatagctcatgtctttgttttttggaattctcattcttttataatcgccgcatcgtttttcgagccatt-ggttttggtacgactgagaat |
26714492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 209
Target Start/End: Complemental strand, 26984428 - 26984231
Alignment:
| Q |
12 |
aaaggttgggaatgtaaaggttggtcgatttattgttgcaa-tttaaccataactgattatcttcaaacctatcaattcgagaatctgttttccaagcga |
110 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| | |||| || |||||| ||||| | |||| ||||||| |||||||| |||||||| ||| ||| | |
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| T |
26984428 |
aaaggctgggaatgtaaaggttggttgatttttcgttgtaattttaacgataaccggttattttcaaacatatcaattagagaatcttattttgaagtaa |
26984329 |
T |
|
| Q |
111 |
aactcgcccattgctcatgctgttgggttttgggattatcactcttttataactgccgcggcggttttcgagccattgggttttggtaccactgggaat |
209 |
Q |
| |
|
||||||| || ||||||| ||| |||||| ||| ||| |||||||||| ||||| || ||||||||||||| ||||||||||| |||| |||| |
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|
| T |
26984328 |
aactcgctgatagctcatgtctttgttttttggaattctcattcttttataatcgccgcatcgtttttcgagccatt-ggttttggtacgactgagaat |
26984231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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