View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15424_low_29 (Length: 280)
Name: NF15424_low_29
Description: NF15424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15424_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 9 - 260
Target Start/End: Complemental strand, 31241502 - 31241251
Alignment:
| Q |
9 |
agcagagagtacttgagccaaatgaataaggtacaatatattaaccatctactactcaagattcacatttgtagtattactctgtagattattatatata |
108 |
Q |
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| T |
31241502 |
agcagagagtacttgagccaaatgaataaggtacaatatattaaccatctactactaaagattcacatttgtagtattactatgtagattattatatata |
31241403 |
T |
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| Q |
109 |
tgctagatgttggtcctctaattcattttaattggtgccataccatttcaaaattggcagagctatatagacaaattggtgggagaagcatacacaaaat |
208 |
Q |
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| T |
31241402 |
tgctagatgttggtcctctaattcattttaattggtgccataccatttcaaaattggcagagctatatagacaaattggtgggagaagcatacacaaaat |
31241303 |
T |
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| Q |
209 |
ggcatgagttggaggaaattgatggggttttaaatgataacattgctttgtt |
260 |
Q |
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| T |
31241302 |
ggcatgagttggaggaaattgatggggttttaaatgataacattgctttgtt |
31241251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 9 - 260
Target Start/End: Complemental strand, 31232532 - 31232281
Alignment:
| Q |
9 |
agcagagagtacttgagccaaatgaataaggtacaatatattaaccatctactactcaagattcacatttgtagtattactctg--tagattattata-t |
105 |
Q |
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| T |
31232532 |
agcagagagtacttgaaccaaatgaataaggtacaatat--taaccatctactactcaagactcacatttgtagtattactttaatttgttgattacact |
31232435 |
T |
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| Q |
106 |
atatgctagatgttggtcctctaattcattttaattggtgccataccatttcaaaattggcagagctatatagacaaattggtgggagaagcatacacaa |
205 |
Q |
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| T |
31232434 |
atatgctagatattagtcttctaattcattttaattggtgttataccatttctaatttgt-agagctatatagacaaattggttggagaagcatacacaa |
31232336 |
T |
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| Q |
206 |
aatggcatgagttggaggaaattgatggggttttaaatgataacattgctttgtt |
260 |
Q |
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| T |
31232335 |
aatggcatgagttggaggaaattgatggggttttaaatgataacattgctttgtt |
31232281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 31208936 - 31208896
Alignment:
| Q |
217 |
ttggaggaaattgatggggttttaaatgataacattgcttt |
257 |
Q |
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| T |
31208936 |
ttggacgaagttgatgggattttaaatgataacattgcttt |
31208896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 260
Target Start/End: Complemental strand, 44016603 - 44016550
Alignment:
| Q |
207 |
atggcatgagttggaggaaattgatggggttttaaatgataacattgctttgtt |
260 |
Q |
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|||| ||||||||||||||||||||| ||||| ||||| ||| |||||||||| |
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| T |
44016603 |
atggaatgagttggaggaaattgatgaagttttgaatgacaacgttgctttgtt |
44016550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 44029976 - 44030029
Alignment:
| Q |
207 |
atggcatgagttggaggaaattgatggggttttaaatgataacattgctttgtt |
260 |
Q |
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|||| ||||||||||||||||||||| ||||| ||||| ||| |||||||||| |
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| T |
44029976 |
atggaatgagttggaggaaattgatgaagttttgaatgacaacgttgctttgtt |
44030029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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