View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15424_low_3 (Length: 663)
Name: NF15424_low_3
Description: NF15424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15424_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 14 - 652
Target Start/End: Original strand, 26494910 - 26495552
Alignment:
| Q |
14 |
gagattaacccttatgattatgatcaggagaaagctgaaatatacacaaaagaaacagaacattcaccatgaaacaaacaaggccttaattttccatttt |
113 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26494910 |
gagattaacccttatgattattatcaggagaaagctgaaatatacacaaaagaaacagaacattcaccatgaaacaaacaaggccttaattttccatttt |
26495009 |
T |
|
| Q |
114 |
cctgattttgtagctgtcacaaaacttttttctttcttcatcatatatctatatccctctatggataaattaaaaatgagtcataaactatgaacaggga |
213 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
26495010 |
cctg-ttttgtagctgtcacaaaacttttttctttcttcatcatatatctatatccctgtatggataaattaaaaatgacgcataaactatgaacaggga |
26495108 |
T |
|
| Q |
214 |
cacatcggtgtcagacacaacacgtgtctg-----atacggagacacgcctaatcttgtctcctaatcctagaagtgtctgtgcctcgtaattcataaat |
308 |
Q |
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| T |
26495109 |
cacgtaggtgtcagacacaacacgtgtctgatctgatacggagacacgcctaatcctgtctcctaatcctagaagtgtccgtgcctcgtagctcataaat |
26495208 |
T |
|
| Q |
309 |
cataatttttcaaacacaaggtcaatagaatcaaacacgattatttgattattataataatgaaaactatgattattgaagaatccaaacctataaacat |
408 |
Q |
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| T |
26495209 |
cataatttttcaaacacaaggtcaatagactcaaacaaaattatttgattattataataataaaaactatgattattgaagaatccaaacctataaacat |
26495308 |
T |
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| Q |
409 |
acctaatcttaacagaaagaggagtccaacattgtgtgaaaattatatcaccccttttggttccaaaaagccaatactccctcaaacatttctcatcacc |
508 |
Q |
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| T |
26495309 |
acctaatcttaacagaaagaggagtccaacattgtgtgaaaattatatcaccccttttggttccaaaaagccaatactccctcaaacatttctcatcacc |
26495408 |
T |
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| Q |
509 |
atcctccaaaactctccttatagccaattccctcctcatcataggatccaacaccttcatggaaaccacaccaacagcaccaccactcttccatggcaca |
608 |
Q |
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| T |
26495409 |
atcctccaaaactctccttatagccaattccctcctcatcataggatccaacaccttcatggaaaccacaccaacaccaccaccactcttccatggcaca |
26495508 |
T |
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| Q |
609 |
atctttgccggaacgcgcaccaccgtgcctttccgatgatgatg |
652 |
Q |
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| T |
26495509 |
atctttgccggaacgcgcaccaccgtgcctttccgatgatgatg |
26495552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 263
Target Start/End: Complemental strand, 3951544 - 3951499
Alignment:
| Q |
218 |
tcggtgtcagacacaacacgtgtctgatacggagacacgcctaatc |
263 |
Q |
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| T |
3951544 |
tcggtgtcagacacgacacgtgtctgacacgggaacacgcctaatc |
3951499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 28524490 - 28524534
Alignment:
| Q |
220 |
ggtgtcagacacaacacgtgtctgatacggagacacgcctaatct |
264 |
Q |
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|||||| |||||||||||||||||| || || ||||||||||||| |
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| T |
28524490 |
ggtgtcggacacaacacgtgtctgacacagaaacacgcctaatct |
28524534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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