View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15424_low_39 (Length: 232)

Name: NF15424_low_39
Description: NF15424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15424_low_39
NF15424_low_39
[»] chr6 (8 HSPs)
chr6 (21-232)||(2619775-2619986)
chr6 (21-232)||(2677598-2677809)
chr6 (19-225)||(2448374-2448580)
chr6 (19-232)||(2586085-2586298)
chr6 (19-219)||(2572760-2572960)
chr6 (19-228)||(2645158-2645367)
chr6 (21-218)||(2600328-2600525)
chr6 (19-218)||(2432514-2432713)


Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 21 - 232
Target Start/End: Complemental strand, 2619986 - 2619775
Alignment:
Q  21 cacactttattgtcttgatggatacacaaattcaacatggttgaatccaactttccctgacactttctctagaatttcaccttccatgtttttagaatct 120  Q
    |||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2619986 cacactttctggtcttgatggatacacaaattcaacatggttgaattcaactttccctgacactttctctagaatttcaccttccatgtttttagaatct 2619887  T
Q  121 atttttggaactctttttatcatttccattattctttctcctgcaacacttgcctctgagaagtacttcacatttgataaaccagctcctaaagccctgc 220  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2619886 atttttggaactctatttatcatttccattattctttctcctgcaacacttgcctctgagaagtacttcacatttgatagaccagctcctaaagccctgc 2619787  T
Q  221 cacataagaaaa 232  Q
    |||||| |||||    
T  2619786 cacataggaaaa 2619775  T

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Target: chr6; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 2677598 - 2677809
Alignment:
Q  21 cacactttattgtcttgatggatacacaaattcaacatggttgaatccaactttccctgacactttctctagaatttcaccttccatgtttttagaatct 120  Q
    |||||||| | ||||||||||||||||||||||||||||||||||  |||||| |||| | ||||||||||||||||||||||| ||||||| |||||||    
T  2677598 cacactttctggtcttgatggatacacaaattcaacatggttgaactcaacttcccctaagactttctctagaatttcaccttcgatgttttcagaatct 2677697  T
Q  121 atttttggaactctttttatcatttccattattctttctcctgcaacacttgcctctgagaagtacttcacatttgataaaccagctcctaaagccctgc 220  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  2677698 atctttggaactctttttatcatttccattattctttctcctgcaacacttgcttctgagaagtacttcacatttgataaaccagctcctaaagccctac 2677797  T
Q  221 cacataagaaaa 232  Q
    ||||||||||||    
T  2677798 cacataagaaaa 2677809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 2448580 - 2448374
Alignment:
Q  19 atcacactttattgtcttgatggatacacaaattcaacatggttgaatccaactttccctgacactttctctagaatttcaccttccatgtttttagaat 118  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||| |||||| |||  | |||||||||||||||||||||||||| |||| |||||    
T  2448580 atcacactttctggtcttgatggatacacaaattcaacatggttgaattcaacttcccccaagactttctctagaatttcaccttccatattttcagaat 2448481  T
Q  119 ctatttttggaactctttttatcatttccattattctttctcctgcaacacttgcctctgagaagtacttcacatttgataaaccagctcctaaagccct 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||| ||||||    
T  2448480 ctatttttggaactctttttatcatttccattattctttctcctgcaacacttgcttctgagaagtacttcacatttgataaactaactcctacagccct 2448381  T
Q  219 gccacat 225  Q
    | |||||    
T  2448380 gtcacat 2448374  T

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Target: chr6; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 2586298 - 2586085
Alignment:
Q  19 atcacactttattgtcttgatggatacacaaattcaacatggttgaatccaactttccctgacactttctctagaatttcaccttccatgtttttagaat 118  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||| ||||||||||||||||||||  ||||    
T  2586298 atcacactttctggtcttgatggatacacaaattcaacatggttgaattcaacttcccccgacactttctctataatttcaccttccatgttttcggaat 2586199  T
Q  119 ctatttttggaactctttttatcatttccattattctttctcctgcaacacttgcctctgagaagtacttcacatttgataaaccagctcctaaagccct 218  Q
    | || ||||||||||||||||||| |||||||||||||||||||||  ||||||| ||||||||||||||||||||||| | ||||||||||||||||||    
T  2586198 caatctttggaactctttttatcacttccattattctttctcctgctgcacttgcttctgagaagtacttcacatttgacataccagctcctaaagccct 2586099  T
Q  219 gccacataagaaaa 232  Q
    ||||||||||||||    
T  2586098 gccacataagaaaa 2586085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 2572760 - 2572960
Alignment:
Q  19 atcacactttattgtcttgatggatacacaaattcaacatggttgaatccaactttccctgacactttctctagaatttcaccttccatgtttttagaat 118  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||  |||||| |||  | |||||||||| |||||||||||||||||||| |||||    
T  2572760 atcacactttctggtcttgatggatacacaaattcaacatggttgaactcaacttcccccaagactttctctataatttcaccttccatgttttcagaat 2572859  T
Q  119 ctatttttggaactctttttatcatttccattattctttctcctgcaacacttgcctctgagaagtacttcacatttgataaaccagctcctaaagccct 218  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||| || ||| ||||||||    
T  2572860 ctatctttggaactctttttatcacttccattattctttctcctgctgcacttgcttctgagaagtacttcacatttgataaactagttccgaaagccct 2572959  T
Q  219 g 219  Q
    |    
T  2572960 g 2572960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 2645158 - 2645367
Alignment:
Q  19 atcacactttattgtcttgatggatacacaaattcaacatggttgaatccaactttccctgacactttctctagaatttcaccttccatgtttttagaat 118  Q
    |||||||||| | ||||||||||||||||||||||||||||||| ||| ||||||  ||| | |||||||||||||| || ||||||||||||| |||||    
T  2645158 atcacactttctggtcttgatggatacacaaattcaacatggttaaattcaacttctcctaaaactttctctagaatctctccttccatgttttcagaat 2645257  T
Q  119 ctatttttggaactctttttatcatttccattattctttctcctgcaacacttgcctctgagaagtacttcacatttgataaaccagctcctaaagccct 218  Q
    | || ||||||||||| |||||||  |||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||||||||||| |||    
T  2645258 caatctttggaactctatttatcacatccattattctttctcctgctacacttgcttctgaaaagtacttcacatttgataaaacagctcctaaagtcct 2645357  T
Q  219 gccacataag 228  Q
    | ||||||||    
T  2645358 gtcacataag 2645367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 21 - 218
Target Start/End: Original strand, 2600328 - 2600525
Alignment:
Q  21 cacactttattgtcttgatggatacacaaattcaacatggttgaatccaactttccctgacactttctctagaatttcaccttccatgtttttagaatct 120  Q
    |||||||| | ||||||||||||||||||||||||||| ||||||  |||||| |||  | |||||||||||||||||||||||||| |||| ||||||     
T  2600328 cacactttctggtcttgatggatacacaaattcaacattgttgaactcaacttcccccaagactttctctagaatttcaccttccatattttcagaatca 2600427  T
Q  121 atttttggaactctttttatcatttccattattctttctcctgcaacacttgcctctgagaagtacttcacatttgataaaccagctcctaaagccct 218  Q
    || ||||||| |  ||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  2600428 atctttggaatttgttttatcatttccattattctttctcctgctgcacttgcttctgagaagtacttcacatttgataaaccagctccgaaagccct 2600525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 2432713 - 2432514
Alignment:
Q  19 atcacactttattgtcttgatggatacacaaattcaacatggttgaatccaactttccctgacactttctctagaatttcaccttccatgtttttagaat 118  Q
    |||||||||| | ||||||||||||||||||||||||||| ||||||  |||||| |||  | |||||||||| |||||||||||||||||||| |||||    
T  2432713 atcacactttctggtcttgatggatacacaaattcaacattgttgaactcaacttcccccaagactttctctataatttcaccttccatgttttcagaat 2432614  T
Q  119 ctatttttggaactctttttatcatttccattattctttctcctgcaacacttgcctctgagaagtacttcacatttgataaaccagctcctaaagccct 218  Q
    ||||  |||||||||||||||||| ||||||||||||||||||||| |||||||| |||| ||||||| |||||||||| |||| || ||| ||||||||    
T  2432613 ctatcgttggaactctttttatcacttccattattctttctcctgccacacttgcttctgcgaagtacctcacatttgagaaacaagttccaaaagccct 2432514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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