View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15424_low_4 (Length: 614)

Name: NF15424_low_4
Description: NF15424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15424_low_4
NF15424_low_4
[»] chr7 (6 HSPs)
chr7 (18-457)||(354329-354768)
chr7 (18-408)||(10580712-10581116)
chr7 (18-239)||(10575312-10575532)
chr7 (534-597)||(354845-354908)
chr7 (534-597)||(10581244-10581307)
chr7 (164-236)||(39954885-39954957)
[»] chr3 (7 HSPs)
chr3 (47-240)||(21584633-21584825)
chr3 (33-236)||(25084978-25085180)
chr3 (33-236)||(24923500-24923702)
chr3 (66-236)||(24497299-24497468)
chr3 (66-236)||(31825597-31825766)
chr3 (66-233)||(24919929-24920095)
chr3 (66-236)||(24982019-24982188)
[»] chr8 (1 HSPs)
chr8 (18-240)||(14261068-14261289)
[»] chr4 (2 HSPs)
chr4 (17-240)||(22898477-22898699)
chr4 (17-240)||(22950145-22950367)
[»] chr2 (1 HSPs)
chr2 (47-240)||(41027526-41027718)


Alignment Details
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 18 - 457
Target Start/End: Original strand, 354329 - 354768
Alignment:
18 gcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtg 117  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
354329 gcaaagtgacatagcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtg 354428  T
118 gttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
354429 gttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcatgcaaggaggaagactc 354528  T
218 tgactgctatggatgttgtttatcagggaagaaccctctacagttttggtggatgaagaagatgaagatttgttatgttgtttctttgtatttgtagcat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
354529 tgactgctatggatgttgtttatcagggaagaaccctctacagttttggtggatgaagaagatgaagatttgttatgttgtttctttgtatttgtagcat 354628  T
318 gtgagtgttccgtacaattgttatcattgtaatctaatgaaatgatctttcatggtgaactctgattctaacttatgttaatcccttgactnnnnnnntt 417  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||    
354629 gtgagtgttccatacaattgttatcattgtaatctaatgaaatgatctttcatggtgaactctgattctaacttatgttaatcccttgactaaaaaaatt 354728  T
418 agacaaatacacagtttaatttggtttcgatgaagtacag 457  Q
    ||||||||||||||||||||||||||||||||||||||||    
354729 agacaaatacacagtttaatttggtttcgatgaagtacag 354768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 408
Target Start/End: Original strand, 10580712 - 10581116
Alignment:
18 gcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtg 117  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
10580712 gcaaagtgatattgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagagttggtgtgaagaggatcagtg 10580811  T
118 gttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactc 217  Q
    | ||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||  |||||||||||||||||||||||     | |||||||||||    
10580812 g-tttgatctatgaggaaataagaggactgttgaagattttcttgcagaataagattcttgatgctgttacttacactgagc-----atgaggaagactc 10580905  T
218 tgactgctatggatgttgtttatcagggaagaaccctctacagttttggtggatgaagaagatgaagatttgttatgttgtttctttgtatttgtagcat 317  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| | ||||||| |||||||| | |||    
10580906 tgactgctatggatgttgtttatcagggaagaaccctctatggttttggtggatgaagaagatgaagatttgttaagctgtttctgtgtatttgaaacat 10581005  T
318 gtgagtgttccgtacaattgttatc--------------------attgtaatctaatgaaatgatctttcatggtgaactctgattctaacttatgtta 397  Q
    |||||||||||||| ||||||||||                    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
10581006 gtgagtgttccgtataattgttatcgttttgtaagttttatcaagattgtaatataatgaaatgatctttcatggtgaattctgattctaacttatgtta 10581105  T
398 atcccttgact 408  Q
    |||||||||||    
10581106 atcccttgact 10581116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 10575312 - 10575532
Alignment:
18 gcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtg 117  Q
    |||||| ||||||||||||||||  | |  ||||| |||||||| |||||||||||||||||| |||||||||||||||| |||||||| || |||||||    
10575312 gcaaagagacatcgcaaggttctccgtgacaacatccaaggaatcacaaagccagcgattcgtcgattggcgagaagaggaggtgtgaaaagaatcagtg 10575411  T
118 gttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactc 217  Q
    |  || ||||||||||||| |||||| ||||||||||| |||||| ||||||  ||  | |||||||||||||||||||||| ||| |||||||| |||     
10575412 g-attgatctatgaggaaacaagaggtgtgttgaagatcttcttggagaatgttataagagatgctgttacttacactgagcatgcgaggaggaaaactg 10575510  T
218 tgactgctatggatgttgttta 239  Q
    ||||||||||||||||||||||    
10575511 tgactgctatggatgttgttta 10575532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 534 - 597
Target Start/End: Original strand, 354845 - 354908
Alignment:
534 gtgagtgtttgttaacttgatttttagtagttttgttattttaacgtcgtggatgcacaggtgt 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
354845 gtgagtgtttgttaacttgatttttagtagttttgttattttaacgtcgtggatgcacaggtgt 354908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 534 - 597
Target Start/End: Original strand, 10581244 - 10581307
Alignment:
534 gtgagtgtttgttaacttgatttttagtagttttgttattttaacgtcgtggatgcacaggtgt 597  Q
    |||||||||||||||||||||||||  |||||||||||||||||| | |||||||| |||||||    
10581244 gtgagtgtttgttaacttgattttttttagttttgttattttaacttagtggatgcgcaggtgt 10581307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 236
Target Start/End: Complemental strand, 39954957 - 39954885
Alignment:
164 agaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgt 236  Q
    |||||| |||| |||||||||||||||||||||||| ||| |||||||| ||| | || || |||||||||||    
39954957 agaatgtgattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgt 39954885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 4e-55; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 47 - 240
Target Start/End: Complemental strand, 21584825 - 21584633
Alignment:
47 taacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagt 146  Q
    ||||||||| ||||| || ||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||| | | |||||||||| |||||||||    
21584825 taacattcagggaatcaccaagccagcgattcgtcgattggcgagaagaggtggtgttaagagaatcagtggtttgatt-tatgaggaaacaagaggagt 21584727  T
147 gttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgtttat 240  Q
      | |||||||||||| |||||| |||| ||||||| ||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||    
21584726 tcttaagattttcttggagaatgtgattcgtgatgcggttacgtacactgagcatgcaaggaggaagactgtgactgctatggatgttgtttat 21584633  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 33 - 236
Target Start/End: Original strand, 25084978 - 25085180
Alignment:
33 aaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgag 132  Q
    ||||||||| | | |||||| || || || || ||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||| || |||||     
25084978 aaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtagattggcgagaagaggtggtgtgaagagaatcagtgg-tttgatatatgaa 25085076  T
133 gaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatg 232  Q
    ||||  ||||| || |||||||| |||||| |||||| |||  ||||||| ||||| ||||||||||  ||||||||||||||| |||| || |||||||    
25085077 gaaaccagaggtgtcttgaagatcttcttggagaatgtgatccgtgatgcagttacatacactgagcacgcaaggaggaagactgtgacagccatggatg 25085176  T
233 ttgt 236  Q
    ||||    
25085177 ttgt 25085180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 33 - 236
Target Start/End: Complemental strand, 24923702 - 24923500
Alignment:
33 aaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgag 132  Q
    ||||||||| | | |||||| || || || || ||||| || |||||| ||||||| |||||||||||||| ||||| ||||||||||| | |||||||     
24923702 aaggttcttcgtgataacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgttaagagaatcagtggtttga-tctatgaa 24923604  T
133 gaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatg 232  Q
    ||||  ||||| || |||||||| |||||| ||||||  ||| |||||||||| || ||||||||||  ||||||||||||||  |||| || |||||||    
24923603 gaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgctgtgacatacactgagcacgcaaggaggaagacagtgacagccatggatg 24923504  T
233 ttgt 236  Q
    ||||    
24923503 ttgt 24923500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 66 - 236
Target Start/End: Complemental strand, 24497468 - 24497299
Alignment:
66 aagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcag 165  Q
    ||||| || |||||| ||||||| |||||||||||||| ||||| |||||||| || | ||||||| ||||  ||||| || |||||||| |||||| |     
24497468 aagcctgctattcgtcgattggcaagaagaggtggtgttaagagaatcagtggattga-tctatgaagaaaccagaggtgtcttgaagatcttcttggaa 24497370  T
166 aatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgt 236  Q
    |||| |||  ||||||| ||||| ||||||||||  ||||||||||||||| |||| || |||||||||||    
24497369 aatgtgatccgtgatgcagttacatacactgagcacgcaaggaggaagactgtgacagccatggatgttgt 24497299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 66 - 236
Target Start/End: Complemental strand, 31825766 - 31825597
Alignment:
66 aagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcag 165  Q
    ||||| || |||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||  ||||| || |||||||| |||||| ||    
31825766 aagcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtgg-tttgatctatgaagaaactagaggtgtcttgaagatcttcttggag 31825668  T
166 aatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgt 236  Q
    ||||  ||  ||||||| || || ||||||||||  || |||||||||||  | || || |||||||||||    
31825667 aatgtcatccgtgatgcggtcacatacactgagcacgctaggaggaagacagttaccgcgatggatgttgt 31825597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 66 - 233
Target Start/End: Complemental strand, 24920095 - 24919929
Alignment:
66 aagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcag 165  Q
    ||||| || |||||| ||||||| |||||||||||||||||||| ||||| || ||| |||||||| ||||  ||||| || |||||||| |||||  ||    
24920095 aagcctgcaattcgtcgattggcaagaagaggtggtgtgaagagaatcagcgg-tttgatctatgaagaaaccagaggtgtcttgaagatcttcttagag 24919997  T
166 aatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgt 233  Q
    ||||  ||| |||||||||| || ||||||||||  || |||||||||||  |||| || ||||||||    
24919996 aatgtcattcgtgatgctgtgacatacactgagcacgctaggaggaagacagtgacagccatggatgt 24919929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 66 - 236
Target Start/End: Original strand, 24982019 - 24982188
Alignment:
66 aagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcag 165  Q
    ||||| || |||||| ||||||| |||||||||||||| ||||| |||||||| ||| || ||||| ||||  ||||| || |||||||| |||||| ||    
24982019 aagcctgctattcgtcgattggcaagaagaggtggtgttaagagaatcagtgg-tttgatatatgaagaaaccagaggtgtcttgaagatcttcttggag 24982117  T
166 aatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgt 236  Q
    ||||  ||  ||||||| ||||| ||||||||||  || |||||||||||| | || || |||||||||||    
24982118 aatgtcatccgtgatgcagttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgt 24982188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 14261289 - 14261068
Alignment:
18 gcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtg 117  Q
    |||||| |||||||||| || ||| | |  ||||| |||||||| |||||||||||||||||  |||| ||||||||||| ||||||||||| ||||| |    
14261289 gcaaagagacatcgcaaagtgcttcgtgacaacatccaaggaatcacaaagccagcgattcggcgattagcgagaagaggaggtgtgaagagaatcagcg 14261190  T
118 gttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactc 217  Q
    | || | | ||||| ||||   | || |||||||||||||||||| |||||| |||  | ||||||||||| || ||||| | ||| |||||||||||      
14261189 ggttgatt-tatgaagaaactcgcggtgtgttgaagattttcttggagaatgtgataagagatgctgttacgtatactgaacatgcgaggaggaagacgg 14261091  T
218 tgactgctatggatgttgtttat 240  Q
    | |||||||||||||||||||||    
14261090 ttactgctatggatgttgtttat 14261068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 22898477 - 22898699
Alignment:
17 agcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagt 116  Q
    ||||||| ||||||| ||||| ||| | |  ||||| || |||||||||||||||||||||||| |  | ||  | ||||| || |||||| | ||||||    
22898477 agcaaagcgacatcgtaaggtgcttcgtgacaacatccagggaataacaaagccagcgattcgtcgtcttgctcgtagaggaggagtgaagcgtatcagt 22898576  T
117 ggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagact 216  Q
    ||||| | | |||||||| | | | || ||||||||||| || ||| |||||| |||| | |||||||| |||||||||||||  || || ||||||||     
22898577 ggtttgatt-tatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctagaaggaagacg 22898675  T
217 ctgactgctatggatgttgtttat 240  Q
     | |||||||||||||| ||||||    
22898676 gttactgctatggatgtggtttat 22898699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 22950145 - 22950367
Alignment:
17 agcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagt 116  Q
    ||||||| ||||||| ||||| ||| | |  ||||| || |||||||||||||||||||||||| |  | ||  | ||||| || |||||| | ||||||    
22950145 agcaaagcgacatcgtaaggtgcttcgtgacaacatccagggaataacaaagccagcgattcgtcgtcttgctcgtagaggaggagtgaagcgtatcagt 22950244  T
117 ggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagact 216  Q
    ||||| | | |||||||| | | | || ||||||||||| || ||| |||||| |||| | |||||||| |||||||||||||  || || ||||||||     
22950245 ggtttgatt-tatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctagaaggaagacg 22950343  T
217 ctgactgctatggatgttgtttat 240  Q
     | |||||||||||||| ||||||    
22950344 gttactgctatggatgtggtttat 22950367  T

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Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 47 - 240
Target Start/End: Original strand, 41027526 - 41027718
Alignment:
47 taacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagt 146  Q
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41027526 taacattcaaggaattacgaagcctgcgattcgtcgtttggcacgtagaggaggagtgaagcgtataagcggtttga-tctacgaagagacacgtggcgt 41027624  T
147 gttgaagattttcttgcagaatgagatttgtgatgctgttacttacactgagcgtgcaaggaggaagactctgactgctatggatgttgtttat 240  Q
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41027625 gttgaagatctttttggagaatgttattcgtgatgctgttacttacacagagcacgctaggagaaagactgttactgctatggatgttgtttat 41027718  T

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