View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15424_low_41 (Length: 210)
Name: NF15424_low_41
Description: NF15424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15424_low_41 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0684 (1 HSPs) |
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| [»] scaffold0163 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 210
Target Start/End: Original strand, 41034478 - 41034678
Alignment:
| Q |
10 |
caattaaatgacaatttataatcacaaccatcgaatgctgttatgcaaaagacatgactatcttattaagaaggaaaaaactaatcatctgatacatttc |
109 |
Q |
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| T |
41034478 |
caattaaatgacaatttataatcaccaccatcgaatgctgttatgcaaaagacatgactatcttattaagaaggaaaaaactaatcatctgatacatttc |
41034577 |
T |
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| Q |
110 |
ttaccaaaacttgtatcccaaggcaaggccaaatataacattaattggtagcagcaccagtcctgcatgcctgcaacaatatcttgcacaagactgaaaa |
209 |
Q |
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| T |
41034578 |
ttaccataacttgtatcccaaggcaaggccaaatgtaacattaattggtagcagcaccagtcctgcatgcctgcaacaatatcttgcacaggactgaaaa |
41034677 |
T |
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| Q |
210 |
a |
210 |
Q |
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| T |
41034678 |
a |
41034678 |
T |
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Target: scaffold0684 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0684
Description:
Target: scaffold0684; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 6083 - 6009
Alignment:
| Q |
12 |
attaaatgacaatttataatcacaaccatcgaatgctgttatgcaaaagacatgac-tatcttattaagaaggaa |
85 |
Q |
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| T |
6083 |
attaaacgacaatttataatcaccaccatcgaatgttgttatgcaaaagacatgacatatcttattgagaaggaa |
6009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0163 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0163
Description:
Target: scaffold0163; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 1851 - 1908
Alignment:
| Q |
10 |
caattaaatgacaatttataatcacaaccatcgaatgctgttatgcaaaagacatgac |
67 |
Q |
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| T |
1851 |
caattaaatgataatttataatcaccaccatcgaatgttgttatgcaaaagacatgac |
1908 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 47935766 - 47935712
Alignment:
| Q |
118 |
acttgtatcccaaggcaaggccaaatataacattaattggtagcagcaccagtcctgca |
176 |
Q |
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| T |
47935766 |
acttgtatcccaaggcaaggccaaatataac----attggtagcagcaccagtcctgca |
47935712 |
T |
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