View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15424_low_6 (Length: 575)
Name: NF15424_low_6
Description: NF15424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15424_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 522; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 17 - 558
Target Start/End: Original strand, 44750642 - 44751183
Alignment:
| Q |
17 |
catttaatgcaagcagaagtgaagtaggagcctaactcaacacagaaaaatataaccgttttgagataaaaatatatatagtgagccaatttataagagt |
116 |
Q |
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| T |
44750642 |
catttaatgcaagcagaagtgaagtaggagcctaactcaacaaagaaaaatataaccgttttgagagaaaaatatatatagtgagccaatttataagagt |
44750741 |
T |
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| Q |
117 |
tctagctataatttgaaagttccatctatgatgcttcagtaaagaaaaactgataattgtattaacaaaaacctgctagcatttcatattttgtcaagta |
216 |
Q |
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| T |
44750742 |
tctagctataatttgaaagttccatctatgatgcttcagtaaagaaaaactgataattgtattaacaaaaacctgctagcatttcatatttagtcaagta |
44750841 |
T |
|
| Q |
217 |
ttaaaacaacattatagactgtacatattgactaaacaaaacattgatcatatagctgcaatattttctccaagatagcacacattgttgcttgtatcat |
316 |
Q |
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| T |
44750842 |
ttaaaacaacattatagactgtacatattgactaaacaaaacattgatcatatagctgcaatattttctccaagatagcacacattgttgcttgtatcgt |
44750941 |
T |
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| Q |
317 |
acacattcatgcatctgcatctgataacatagattgccttataactctgattacatcagtgagagacacaacaccaacaagcaaaccctcttgatcaacc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44750942 |
acacattcatgcatctgcatctgataacatagattgccttataactctgattacatcagtgagagacacaacaccaacaagcaaaccctcttgatcaacc |
44751041 |
T |
|
| Q |
417 |
acccaaactcgatgaacatggtttgtgaccgccttgtcgattacctcggacaaagttgattcagcatagcatgtcacaagctcccttttaggagtaccaa |
516 |
Q |
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| T |
44751042 |
acccaaactcgatgaacatggtttgcgaccgccttgtcgattacctcggacaaagttgattcagcatagcatgtcacaagctcccttttaggagtaccaa |
44751141 |
T |
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| Q |
517 |
tatcattctgtgtatctgatgttgtgtacaaaggactagttg |
558 |
Q |
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| T |
44751142 |
tatcattctgtgtatctgatgttgtgtacaaaggactagttg |
44751183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 338 - 558
Target Start/End: Original strand, 44744323 - 44744543
Alignment:
| Q |
338 |
tgataacatagattgccttataactctgattacatcagtgagagacacaacaccaacaagcaaaccctcttgatcaaccacccaaactcgatgaacatgg |
437 |
Q |
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| T |
44744323 |
tgataacattgattgccttataactctaatgacatcagtgagagacacaacacctacaagcaaaccctcttgatcaaccacccaaactcgatgaacatgg |
44744422 |
T |
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| Q |
438 |
tttgtgaccgccttgtcgattacctcggacaaagttgattcagcatagcatgtcacaagctcccttttaggagtaccaatatcattctgtgtatctgatg |
537 |
Q |
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| T |
44744423 |
tttgcgaccgccttattgattacctcggacaaagtttattcagcatggcatgtcacaagctcccttctaggagtaccaatatcattatgtgtatcagatg |
44744522 |
T |
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| Q |
538 |
ttgtgtacaaaggactagttg |
558 |
Q |
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| T |
44744523 |
ttgtgtacaaaggacttgttg |
44744543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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