View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15424_low_7 (Length: 519)
Name: NF15424_low_7
Description: NF15424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15424_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-141; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 201 - 483
Target Start/End: Original strand, 16027015 - 16027297
Alignment:
| Q |
201 |
cataggagcgtatgttcgttccacaggagcgcatggtcgtgtcactcaatgtcgagtgatacgcacggtctttctcaccttcatgaatgtctagtggaat |
300 |
Q |
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| T |
16027015 |
cataggagcgtatgttcgtgccacaggagcgcatggtcgtgtcactcaatgtcgagtgatacgcacggtctttctcaccttcatgagtgtctagtggaat |
16027114 |
T |
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| Q |
301 |
ttctatagcaggatatatttcaaatttcagtttaacatattctaaatttcgttctgcaactccaacttttttatataccagatctcgattctataatatt |
400 |
Q |
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| T |
16027115 |
ttctatagcaggatatatttcaaatttcagtttaacatatgctaaatttcattctgcaactccaacttttttatataccacatcttgattctataatatt |
16027214 |
T |
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| Q |
401 |
ttaatattaattcaacgagagaaattattcatctttaaaaagttgtcttaattaatactttagtggatcctatatgaatatat |
483 |
Q |
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| T |
16027215 |
ttaatattaattcaacgagagaaattattcttctttaaaaagttgtcttaattaatactttagtggatcctatatgaatatat |
16027297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 16025521 - 16025730
Alignment:
| Q |
1 |
ctttattcaaagttggtttattttcatgatttcacaacaatcaatccaatacgacctaagctagactaaattcatcatagatgttcaattatacttcaat |
100 |
Q |
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| T |
16025521 |
ctttattcaaagttggtttattttcatgatttcacaacaatcaatccaattcgtcctaagctagactaaattcatcatagatgctcaattatacttcaat |
16025620 |
T |
|
| Q |
101 |
taactaagtttaggtgtttgagacccattggtgcac-ttaaaaactgaaaaacaactaaaaatctgacttcccgcgcagagaacaggacacacggtcgtg |
199 |
Q |
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| T |
16025621 |
taactaagtttaggtgtttgagacccattggtgcactttaaaaactgaaaaacaactaaaaatctgacttcccgtgcagaggataggacacacggtcgtg |
16025720 |
T |
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| Q |
200 |
ccataggagc |
209 |
Q |
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| T |
16025721 |
ccataagagc |
16025730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 85 - 202
Target Start/End: Original strand, 16757651 - 16757769
Alignment:
| Q |
85 |
tcaattatacttcaattaactaagtttaggtgtttgagacccattgg--tgcacttaaaaactgaaaaacaactaaaaatctgacttcccgcgcagagaa |
182 |
Q |
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| T |
16757651 |
tcaattatacatcaattaactaagtttaggtgtttgggattcattggtatgc-ctttaaaactgaaaaacaacgaaaaatcggacttcccgcgcacaaga |
16757749 |
T |
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| Q |
183 |
caggacacacggtcgtgcca |
202 |
Q |
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| T |
16757750 |
caggtcacgcggtcatgcca |
16757769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 129
Target Start/End: Complemental strand, 511564 - 511441
Alignment:
| Q |
7 |
tcaaagttggtttattttcatgatttcacaacaatcaatccaatacga-cctaagctagactaaattcatcatagatgttcaattatacttcaattaact |
105 |
Q |
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| T |
511564 |
tcaaagttcgtttattttcacaatttcaaaacattcaatccaattccaacctaagctaggttaaaccaatcgtaagtactcaattacacctcaattaact |
511465 |
T |
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| Q |
106 |
aagtttaggtgtttgagacccatt |
129 |
Q |
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| T |
511464 |
aagtttaggtgtttgggacccatt |
511441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 1273060 - 1273020
Alignment:
| Q |
85 |
tcaattatacttcaattaactaagtttaggtgtttgagacc |
125 |
Q |
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| T |
1273060 |
tcaattatacatcaattaactaagattaggtgtttgggacc |
1273020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 11620823 - 11620771
Alignment:
| Q |
93 |
acttcaattaactaagtttaggtgtttgagacccattggtgcacttaaaaact |
145 |
Q |
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| T |
11620823 |
acttcaagtaattaagtttaggtgtttgagactcattagtatacttaaaaact |
11620771 |
T |
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