View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15425_low_2 (Length: 400)

Name: NF15425_low_2
Description: NF15425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15425_low_2
NF15425_low_2
[»] chr8 (1 HSPs)
chr8 (23-72)||(22593929-22593978)
[»] chr5 (1 HSPs)
chr5 (22-70)||(4518053-4518101)
[»] chr4 (2 HSPs)
chr4 (23-59)||(32584847-32584883)
chr4 (30-70)||(35478819-35478859)
[»] chr1 (1 HSPs)
chr1 (23-63)||(2845330-2845370)


Alignment Details
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 22593929 - 22593978
Alignment:
Q  23 gagttcagatcctctccatttgcttaaaataaatggagactgtaatttgg 72  Q
    ||||| ||||||||||||||||||||||||||||||| | ||| ||||||    
T  22593929 gagttaagatcctctccatttgcttaaaataaatggacaatgtcatttgg 22593978  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 4518053 - 4518101
Alignment:
Q  22 cgagttcagatcctctccatttgcttaaaataaatggagactgtaattt 70  Q
    |||||| ||||||||||||||| ||||||||||| ||||| ||| ||||    
T  4518053 cgagttgagatcctctccatttacttaaaataaacggagaatgtcattt 4518101  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 32584883 - 32584847
Alignment:
Q  23 gagttcagatcctctccatttgcttaaaataaatgga 59  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  32584883 gagttaagatcatctccatttgcttaaaataaatgga 32584847  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 35478819 - 35478859
Alignment:
Q  30 gatcctctccatttgcttaaaataaatggagactgtaattt 70  Q
    ||||||||||||||| |||||||||||||||| ||| ||||    
T  35478819 gatcctctccatttgtttaaaataaatggagaatgttattt 35478859  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 2845370 - 2845330
Alignment:
Q  23 gagttcagatcctctccatttgcttaaaataaatggagact 63  Q
    ||||| ||||||||| |||||| ||||||||||||||||||    
T  2845370 gagttaagatcctcttcatttgtttaaaataaatggagact 2845330  T

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