View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15425_low_4 (Length: 309)
Name: NF15425_low_4
Description: NF15425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15425_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 103 - 293
Target Start/End: Complemental strand, 42187110 - 42186918
Alignment:
| Q |
103 |
tatgaattatgatgataatacctccgaattgcaagaatttaaaattgctggatcatataactatatggcgttggcatcttgactattatcttttccacct |
202 |
Q |
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| T |
42187110 |
tatgaattatgatgataatacctccgaattgcaagaatttaaaattgctggatcatataactatatggcgttggcatcttgactattatctcttccacct |
42187011 |
T |
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| Q |
203 |
tttgaagaacaccatcaaatcctttgataaggtttgtcagatcttgtacttacttctagtatgagaaactcagtacc--tataggcatgaatc |
293 |
Q |
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| T |
42187010 |
tttgaagaactccatcaaatcctttgataaggtttgtcagatcttgtacttacttctagtatgagaaactcagtacctatataggcatgaatc |
42186918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 42189857 - 42189770
Alignment:
| Q |
14 |
agaaattatgcaaacagatcaacgatgagatgcattagatagttcatatatagagttcatcacatcctgcaaaataattaattccaaa |
101 |
Q |
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| T |
42189857 |
agaaattatgcaaacagatcaacgatgagatgcattagatagttcatatatagagttcatcacatcctgcaaaaaaattaattccaaa |
42189770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 19533424 - 19533511
Alignment:
| Q |
14 |
agaaattatgcaaacagatcaacgatgagatgcattagatagttcatatatagagttcatcacatcctgcaaaataattaattccaaa |
101 |
Q |
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| T |
19533424 |
agaaattatgcaaacagatcgacgatgagatgccttagatagttcatatatagagttcatcaaatcctgcaaaagaattaattccaaa |
19533511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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