View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15425_low_5 (Length: 237)
Name: NF15425_low_5
Description: NF15425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15425_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 24136579 - 24136364
Alignment:
| Q |
1 |
tattgttttatatcactactcaggtgtcaacaactctatcttaacaatgtcaagtttgagcgagagtaatcataaaccacattcaatatcataatgtcaa |
100 |
Q |
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| T |
24136579 |
tattgttttatatcactacttaggagtcaacaactctatcttaacagtgtcaagtttgag------taatcataaaccacattcaatatcataatgtcag |
24136486 |
T |
|
| Q |
101 |
aatatgctcaaagtctacattttgatgtacttcaaacaaatctaatttctacaatagacataatatgatggagagaactagttatgatgttatttcaaaa |
200 |
Q |
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||||||||||||||||| |||| ||||||||| |||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| ||| |
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| T |
24136485 |
aatatgctcaaagtctatatttcgatgtactttaaacaaatctaatttctacaatggacttaatataatggagagaactagttatgatgttatttc-aaa |
24136387 |
T |
|
| Q |
201 |
agtatattctagcattgtaagtg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
24136386 |
agtatattctagcattgtaagtg |
24136364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 45893957 - 45894122
Alignment:
| Q |
1 |
tattgttttatatcactactcaggtgtcaacaactctat--cttaacaatgtcaagtttgagcgagagtaatcataaaccacattcaatatcataatgtc |
98 |
Q |
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|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45893957 |
tattgttttatatcactactcaggagtcaacaactctatatcttaacaatgtcaagtttgagcgag--taatcataaaccacattcaatatcataatgtc |
45894054 |
T |
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| Q |
99 |
aaaatatgctcaaagtctacattttgatgtacttcaaacaaatctaatttctacaatagacataatat |
166 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45894055 |
aaaatatgctcaaagtctacatttcgatgtacttcaaacaaatctaatttctacaatagacataatat |
45894122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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