View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15426_high_11 (Length: 434)
Name: NF15426_high_11
Description: NF15426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15426_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 211 - 420
Target Start/End: Complemental strand, 34019267 - 34019058
Alignment:
| Q |
211 |
aagtacctctttaagtgggatcctacgaaagatggtccaagtgatggtaacagcagggttgaaatgtcctccagagatatgaccaacagagtaagacatg |
310 |
Q |
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| T |
34019267 |
aagtacctctttaagtgaggtcctacgaaagatggtccatgtgatggtaacagcagggttgaaatgtcctccagagatatgaccaacagagtaagacatg |
34019168 |
T |
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| Q |
311 |
accattacaataagcccccaagtgatacatacccctggaaatgtgacagacccatagatcttgtccactgctacagacccacatccagcaaacaccacaa |
410 |
Q |
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| T |
34019167 |
accattacaataagcccccaagtgatacatacccctggaaatgtgacagacccatagatcttgtccactgctacagacccacatccagcaaacaccacaa |
34019068 |
T |
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| Q |
411 |
aatatgtccc |
420 |
Q |
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|||||||||| |
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| T |
34019067 |
aatatgtccc |
34019058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 21 - 174
Target Start/End: Complemental strand, 34019463 - 34019308
Alignment:
| Q |
21 |
agtgataatgttccacttgcaagcgttgatcctaccaactgagcaaaaatgtatagtggagcctacatgtacaag-aaacatatggtagtgagagtgatt |
119 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| ||||| |
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| T |
34019463 |
agtgataatgttccactcgcaagcgttgatcctaccaactgagcaaaaatgtatagtggagcctacatgcacaagaaaacatatggtagttagaatgatt |
34019364 |
T |
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| Q |
120 |
catgaagaacacaaatgaatgaaatatacatt-aagcattagtcacttatggaact |
174 |
Q |
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| T |
34019363 |
catatagaacacaaatgaatgaaatattcattaaagcattagtcacttatgaaact |
34019308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 251 - 417
Target Start/End: Original strand, 1704058 - 1704224
Alignment:
| Q |
251 |
gtgatggtaacagcagggttgaaatgtcctccagagatatgaccaacagagtaagacatgaccattacaataagcccccaagtgatacatacccctggaa |
350 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||| |||||| ||||||| ||||||| | |||||||||||| || | |||||||| |
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| T |
1704058 |
gtgatggtaacagcagggttgaagaggcctccagagatatgaccaactgagtaacacatgactgttacaatcaacccccaagtgatgcaaatccctggaa |
1704157 |
T |
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| Q |
351 |
atgtgacagacccatagatcttgtccactgctacagacccacatccagcaaacaccacaaaatatgt |
417 |
Q |
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| T |
1704158 |
aagtgatagagccatggatcttgtttactgctacagcaccacacccagcaaacactagaaaatatgt |
1704224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 5388748 - 5388698
Alignment:
| Q |
254 |
atggtaacagcagggttgaaatgtcctccagagatatgaccaacagagtaa |
304 |
Q |
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||||| ||||||||||||||||| | |||||||| ||||||||||||||| |
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| T |
5388748 |
atggtgacagcagggttgaaatgagcaccagagatgtgaccaacagagtaa |
5388698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 5402557 - 5402507
Alignment:
| Q |
254 |
atggtaacagcagggttgaaatgtcctccagagatatgaccaacagagtaa |
304 |
Q |
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||||| ||||||||||||||||| | |||||||| ||||||||||||||| |
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| T |
5402557 |
atggtgacagcagggttgaaatgagcaccagagatgtgaccaacagagtaa |
5402507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 5415292 - 5415242
Alignment:
| Q |
254 |
atggtaacagcagggttgaaatgtcctccagagatatgaccaacagagtaa |
304 |
Q |
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||||||||||||||||||||||| | ||||| || ||||||||||||||| |
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| T |
5415292 |
atggtaacagcagggttgaaatgagcaccagaaatgtgaccaacagagtaa |
5415242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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