View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15426_high_12 (Length: 434)
Name: NF15426_high_12
Description: NF15426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15426_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Original strand, 39447397 - 39447799
Alignment:
| Q |
18 |
gaaagaaacaaacttcttaaagaaattgctactcaattccacatacaatggaatcctcccatggcattaaagtttggatgcgattgtggatgcgattgtg |
117 |
Q |
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| T |
39447397 |
gaaagaaacaaacttcttaaagaaattgctactcaattccacatacaatggaatcctcccatggcattaaagtttggatgcgattgtggatgcgattgtg |
39447496 |
T |
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| Q |
118 |
ctagttgcggatgctgcaaataattttacattagcacaaactatgtnnnnnnntagtttgcatgcagatttaattttctaagaatctgggttgttaaaat |
217 |
Q |
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| T |
39447497 |
ctagttgcggatgctgcaaataattttacatttgcacaaactatgtaaaaaaatagtttgcatgcagatttaattttctaagaatctgggttgttaaaat |
39447596 |
T |
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| Q |
218 |
tagctgttacaatccatattagatgtaaatattttcgtgtctcaaatttacttcgtacaatcgagattttttatggannnnnnngaattggatagatcaa |
317 |
Q |
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| T |
39447597 |
tagctgttacaatccatattagatgtaaatattttcgtgtctcaaatttacttcgtacaatcgagattttttatggatttttttgaattggatagatcaa |
39447696 |
T |
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| Q |
318 |
cagaaccttttgttatatgttcaagtgtgagattacaatctaatgttggcatgtcattagatttttgatatttgactatattttccaaatgtgtttgcct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
39447697 |
cagaaccttttgttatatgttcaagtgtgagattacaatctaatgttggcttgtcattagatgtttgatatttgactatattttccaaatgtgtttgtct |
39447796 |
T |
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| Q |
418 |
atg |
420 |
Q |
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| T |
39447797 |
atg |
39447799 |
T |
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