View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15426_high_13 (Length: 433)
Name: NF15426_high_13
Description: NF15426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15426_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 37968982 - 37969398
Alignment:
| Q |
1 |
cactctctattactgaagtctcgtaagtacaactcaactgataaaaggtcgtagggacattcgatatactgtaggcacaagttcaaacccgcaccactat |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||| |
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| T |
37968982 |
cactctctattactgaagtctcgtaaatacaactcaactgataaaaggtcgtagggacattcgatatgctgtaggcacaacttcaaacctgcaccactat |
37969081 |
T |
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| Q |
101 |
aatctttnnnnnnnnnnnnnnnnn---tcccagatattcgattacatttaacaattttgctactatttgatgtttgagcaatagattaagatctacttac |
197 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37969082 |
aatctttaaaataaaataaaaaaaaaatcccaaatattcgattacatttaacaattttgctactatttgatgtttgagcaatagattaagatctacttac |
37969181 |
T |
|
| Q |
198 |
gaataggcctttatgtcttaactatcaatcattcatctaaaatgatagttatgacctatgatattttatgttgttattctagaatcttgaaaactagact |
297 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37969182 |
gaacaggcctttatgtcttaactatcaatcattcatctaaaatgatagttatgacctatgatattttatgttgttattctagaatcttgaaaactagact |
37969281 |
T |
|
| Q |
298 |
agatatgatttgtctttttatattttgcttttggcatagtcatactgtgaatttgtgatattgctatggctgcatctgactatgcttctttagagcactt |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37969282 |
agatatgatttgtctttttatattttgcttttggcataatcatactgtgaatttgtgatattggtatggctgcatctgactatgcttctttagagcactt |
37969381 |
T |
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| Q |
398 |
tatatacgtagcgtaat |
414 |
Q |
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||||||||||||||||| |
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| T |
37969382 |
tatatacgtagcgtaat |
37969398 |
T |
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