View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15426_high_15 (Length: 416)
Name: NF15426_high_15
Description: NF15426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15426_high_15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 21 - 416
Target Start/End: Original strand, 24527044 - 24527437
Alignment:
| Q |
21 |
tgtgggctatttgaaaagttcaaaatgcaaatatctttcaacaaaaatattttaaaatctaataaattgttgtcatggtggtgactgaaaataaatgaga |
120 |
Q |
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| T |
24527044 |
tgtgggctatttgaaaagttcaaaatgcaaatatctttcaacaaaaatattttaaaatctaataaattgttatcatggtggtgactgaaaataaatgaga |
24527143 |
T |
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| Q |
121 |
aaggatttaaggttgaattttatcaatatctttggggtccttagctatttcgctttattctttttgatagtatgttatgagttggtttggttttagcttg |
220 |
Q |
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| T |
24527144 |
aaggatttaaggttgaattttatcaatatctttggggtccttagctatttcgctttattctttttgatagtatgttatgagttggtttggttttagcttg |
24527243 |
T |
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| Q |
221 |
tttttgacatgaccttggtcttgannnnnnngcattgcttcttgtaattgtattttgtaccattgttgcattttgtgttatgggtagtgctcattaatat |
320 |
Q |
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| T |
24527244 |
tttttgacatgaccttggtcttgatttttttgcattgcttcttgtaattgtattttgtaccattgttgcattttgtgttatgggtagtgctcattaatat |
24527343 |
T |
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| Q |
321 |
atctttttggtttattaaataaaaaatcaattttgattttnnnnnnnnnnccgatacaaatgaagatgacaaatctaaatggatggtataatttcg |
416 |
Q |
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| T |
24527344 |
atctttttggtttattaaataaaaaatcaattttgattt--caaaatataccgataaaaatgaagatgacagagttaaatggatggtataatttcg |
24527437 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 16904066 - 16904005
Alignment:
| Q |
66 |
aatattttaaaatctaataaattgttgtcatggtggtgactgaaaataaatgagaaaggatt |
127 |
Q |
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| T |
16904066 |
aatattttaaaatctattaaattgttgttatgatggtggctcaaaataaatgtcaaaggatt |
16904005 |
T |
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