View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15426_high_18 (Length: 387)
Name: NF15426_high_18
Description: NF15426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15426_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 40978438 - 40978072
Alignment:
| Q |
1 |
attaagcaatatatattaagttatagttttgttacagaataatgaagtgaaaaaagcaaaagagagaaaattatgagtttaccatgagtggaagttgagg |
100 |
Q |
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| T |
40978438 |
attaagcaatatatattaagttatagttttgctacagaataatgaagtgaaaaaagcaaaagagagaaaattatgagtttaccttgagtggaagttgagg |
40978339 |
T |
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| Q |
101 |
acagatgtattgaagcgtcttcttgttatgattactactcatgtcactatttgatcccattttcatgataagaacacgacaccatttgcagttttagtat |
200 |
Q |
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| T |
40978338 |
acagatgtattgaagcgtcttcttgttatgattactactcatgtcactatttgatcccattttcatgataagaacacgacaccatttgcagttttagtat |
40978239 |
T |
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| Q |
201 |
accttttttagggaacagacactcctttatttattttggctttggccacagaggatgtatttctatactctacagtctgtactatataatatactgtatc |
300 |
Q |
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| T |
40978238 |
accttttttagggaacagacactcatttatttattttggctttggccacagaggatctatttctatactctacagtctgtactatataatatactgtatc |
40978139 |
T |
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| Q |
301 |
cagtcactacaaattcaatgtgatttcttttaaaagattgctgtatatatagtctagtatgtttatg |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40978138 |
cagtcactacaaattcaatgtgatttcttttaaaagattgctgtatatatagtctagtatgtgtatg |
40978072 |
T |
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