View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15426_high_29 (Length: 274)
Name: NF15426_high_29
Description: NF15426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15426_high_29 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 31694891 - 31694634
Alignment:
| Q |
18 |
attttctcaatttatggtcgtgtttcaattccacacctccccactaagagtttgagcattaaaattagacatttattgaaacgattcataggagaaattc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
31694891 |
attttctcaatttatggtcgtgtttcaattccacacctccccactaagagtttgagtattaaaattaggcatttattgaaacgattcatatgagaaattc |
31694792 |
T |
|
| Q |
118 |
aatgtcaaaagcaattggcagcaatggaaggtatattagaacaaattgg--------cagacaagagttttcatttgggtttcttgtaaaattccttaaa |
209 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31694791 |
aatgtcaaaagcaattagcagcaatggaaggtatattagaacagatttgcaaagtctcagacaagagttttcatttgggtttcttgtaaaatcccttaaa |
31694692 |
T |
|
| Q |
210 |
aacgatgctcgcaagttcaaagcaccatgatgtgtgcttgtccttcaaagttcatctc |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31694691 |
aacgatgctcgcaagttcaaagcaccatgatgtgtgcttgtccttcaaagttcatctc |
31694634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 45534772 - 45534515
Alignment:
| Q |
18 |
attttctcaatttatggtcgtgtttcaattccacacctccccactaagagtttgagcattaaaattagacatttattgaaacgattcataggagaaattc |
117 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45534772 |
attttctcaatttattgttgtgtttcaattccacacctccccactaagagtttgagcattaaaattagacatttattgaaacgattcataggagaaattc |
45534673 |
T |
|
| Q |
118 |
aatgtcaaaagcaattggcagcaatggaaggtatattagaacaaattgg--------cagacaagagttttcatttgggtttcttgtaaaattccttaaa |
209 |
Q |
| |
|
|||||||||| ||||| | |||||||||| ||||||||||||| ||| | ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45534672 |
aatgtcaaaaacaattagtagcaatggaatgtatattagaacagatttgcaaagtctcagacaagagttttcatttgggtttcttgtaaaatcccttaaa |
45534573 |
T |
|
| Q |
210 |
aacgatgctcgcaagttcaaagcaccatgatgtgtgcttgtccttcaaagttcatctc |
267 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45534572 |
aacgatgctcggaagttcaaagcaccatgatgtgtgcttgtccttcaaagttcatctc |
45534515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University