View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15426_high_34 (Length: 255)
Name: NF15426_high_34
Description: NF15426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15426_high_34 |
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| [»] scaffold0727 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 25928331 - 25928112
Alignment:
| Q |
19 |
agttctccctaaaggactctacatatggatgttcgtcccattgctgcatcgcgacactgataattggggaccggatgctacagaattcaagccagaaaga |
118 |
Q |
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| T |
25928331 |
agttctccctaaaggactctacatatggatgttcgtcccattgctgcatcgcgacactgataattggggaccggatgctacagaattcaagccagaaaga |
25928232 |
T |
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| Q |
119 |
tttgctaatggtctttctggagcttgtaagtatcctcaagcttatctaccatttggatatggaagtcgacattgcttaggccaaaactttaccctgacag |
218 |
Q |
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| T |
25928231 |
tttgctaatggtctttctggagcttgtaagtatcctcaagcttatctaccatttggatatggaagtcgacattgcttaggccaaaactttaccctgacag |
25928132 |
T |
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| Q |
219 |
aaattaagattgttcttggt |
238 |
Q |
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|||||||||||||||||||| |
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| T |
25928131 |
aaattaagattgttcttggt |
25928112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0727 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0727
Description:
Target: scaffold0727; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 101 - 238
Target Start/End: Complemental strand, 2270 - 2133
Alignment:
| Q |
101 |
gaattcaagccagaaagatttgctaatggtctttctggagcttgtaagtatcctcaagcttatctaccatttggatatggaagtcgacattgcttaggcc |
200 |
Q |
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| T |
2270 |
gaattcaagccagaaagatttgctaatggtctttctggagcttgtaagtatcctcaagcttatctaccatttggatatggaagtcgacattgcttaggcc |
2171 |
T |
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| Q |
201 |
aaaactttaccctgacagaaattaagattgttcttggt |
238 |
Q |
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| T |
2170 |
aaaactttaccctgacagaaattaagattgttcttggt |
2133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 63 - 222
Target Start/End: Original strand, 26135234 - 26135393
Alignment:
| Q |
63 |
tgcatcgcgacactgataattggggaccggatgctacagaattcaagccagaaagatttgctaatggtctttctggagcttgtaagtatcctcaagctta |
162 |
Q |
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||||||| ||| |||||||||||||||| ||||||||| | ||||| ||||| ||||||||||| ||| |||||| | | |||||||||||||| || || |
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| T |
26135234 |
tgcatcgagacgctgataattggggaccagatgctacaaagttcaatccagagagatttgctaacggtgtttctgcatcatgtaagtatcctcaggcata |
26135333 |
T |
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| Q |
163 |
tctaccatttggatatggaagtcgacattgcttaggccaaaactttaccctgacagaaat |
222 |
Q |
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| T |
26135334 |
tataccatttggacttgggagtcgacattgtctaggtcaaaacttttccattacagaaat |
26135393 |
T |
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