View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15426_high_36 (Length: 242)
Name: NF15426_high_36
Description: NF15426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15426_high_36 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 34876931 - 34876722
Alignment:
| Q |
18 |
gagagaatgtttgaattacttccacgattggagacagtacgtaaggtttaaggaaaggtggtcaattaaaacaaaaatatggtgattcggacaaacagac |
117 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34876931 |
gagagaatgtctgaattacttccacgattggagacagtaagtaaggtttaaggaaaggtggtcaattaaaacaaaaatatggtgattcggacaaacagac |
34876832 |
T |
|
| Q |
118 |
caacttgattatttaatttgtggatgaaaacaattgattcatttctcctccaaaatttaattagt---gtagcttcaaacttcatttaacaattatacaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34876831 |
caacttgattatttaatttgtggatgaaaacaattgattcatttctcctccaaaatttaattagtgtagtagcttcaaacttcatttaacaattatacaa |
34876732 |
T |
|
| Q |
215 |
tgaacctgtt |
224 |
Q |
| |
|
|||||||||| |
|
|
| T |
34876731 |
tgaacctgtt |
34876722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University