View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15426_high_5 (Length: 661)
Name: NF15426_high_5
Description: NF15426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15426_high_5 |
 | |
|
| [»] scaffold0703 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 534; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 14 - 643
Target Start/End: Complemental strand, 4243306 - 4242691
Alignment:
| Q |
14 |
gcataggagttgagggtttgtgagaaggaagattacgtatccaaggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
4243306 |
gcataggagttgagggtttgtgagaaggaagattacgtatccaaggcatggtccatagatttattttcgagccatctccaat-ttccatctatgacccaa |
4243208 |
T |
|
| Q |
114 |
agtgagcaaatattgagtactccatagactcctccatgtatagcatggattatgaccaatcggtgcatccaagaaatcccgtctagggaaataactcagt |
213 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
4243207 |
agtgagcaaagattgagtactccatagactcctccatgtatagcttggattatgaccaatcagt-------------cccgtctagggaaataactcagt |
4243121 |
T |
|
| Q |
214 |
ttaatcttataaagccataaaatcgataataaaatgtgtaacattagttacagatagcattgagagatattaggagtacatacatatacacaaaaccaag |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4243120 |
ttaatcttataaagccataaaatcgataataaaatgtgtaacattagttacagatagcactgagagatattaggagtacatacatatacacaaaaccaag |
4243021 |
T |
|
| Q |
314 |
atcaaacctcagtaccacaaatacctcgattgcctctcaacttcaatcagggtaaaatatggattaaattaattccaatattaatatattgaagcaaact |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4243020 |
atcaaacctcagtaccacaaatacctcgattgcctctcaacttcaatcagggtaaaatatggattaaattaattccaatattaatatattgaagcaaact |
4242921 |
T |
|
| Q |
414 |
gatttcaccagccttgaatttccttctttccaatcccatatataaatgaaaataagttgtcatttaattagtcatagaatcagatgtttttctaccagga |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4242920 |
gatttcaccagccttgaatttccttctttccaatcccatatataaatgaaaataagttgtcatttaattagtcatagaatcagatgtttttctaccagga |
4242821 |
T |
|
| Q |
514 |
agctcttcccattgtagtccctttacctccagtactcttgctttatttgcatccactgctactacaataatagatccatcacaacgccaatagcaaaaac |
613 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4242820 |
agctcttcccattatagtcactttacctccagtactcttgctttgtttgcatccactgctactacaataatagatccatcacaacaccaatagcaaaaac |
4242721 |
T |
|
| Q |
614 |
tactctagttttctccataaggtgccatct |
643 |
Q |
| |
|
||||||||||||||||||||||| |||||| |
|
|
| T |
4242720 |
tactctagttttctccataaggtcccatct |
4242691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 193
Target Start/End: Original strand, 42703921 - 42704060
Alignment:
| Q |
54 |
ccaaggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgta |
153 |
Q |
| |
|
|||||||||| |||| ||||| ||||| | ||||| ||||| ||| || |||||||||| || ||||| | ||| |||||||| ||||| ||||| ||| |
|
|
| T |
42703921 |
ccaaggcatgttccacacattaattttggcaccatcaccaatcttcaatatatgacccaatgtaagcaagtgttgggtactccaaagacttctccaagta |
42704020 |
T |
|
| Q |
154 |
tagcatggattatgaccaatcggtgcatccaagaaatccc |
193 |
Q |
| |
|
||| ||||||||| ||||| || | ||||||||||||| |
|
|
| T |
42704021 |
aagcttggattatggccaatagggacctccaagaaatccc |
42704060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 203
Target Start/End: Complemental strand, 647422 - 647269
Alignment:
| Q |
49 |
cgtatccaaggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctcc |
148 |
Q |
| |
|
||||||||||| | ||||| || || || || |||||||| ||||| |||||||||| ||||| || || ||| |||||||||||||||||||||||| |
|
|
| T |
647422 |
cgtatccaaggtgtagtccacacgttgatattcgagccatcaccaat-ttccatctatatcccaatgtaagtaaagattgagtactccatagactcctcc |
647324 |
T |
|
| Q |
149 |
atgtatagcatggattatgaccaatcggtgcatccaagaaatcccgtctagggaa |
203 |
Q |
| |
|
| || |||| ||| || || || | || || ||||||||||| ||||||||||| |
|
|
| T |
647323 |
aagtgtagcttgggttgtggcccagaggggcctccaagaaatctcgtctagggaa |
647269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 7e-60; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 33496240 - 33496425
Alignment:
| Q |
14 |
gcataggagttgagggtttgtgagaaggaagattacgtatccaaggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaa |
113 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||| || |||||||| |||| ||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
33496240 |
gcataggagttgaaggtttgtgagaagaaagattacgtattcatggcatggtacatagatttattttcgagccatctccaatcttccatctatgacccaa |
33496339 |
T |
|
| Q |
114 |
agtgagcaaata-ttgagtactccatagactcctccatgtatagcatggattatgaccaatcggtgcatccaagaaatcccgtcta |
198 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||| |||| ||||||||||||||||||| | ||||| ||||||| |||| |
|
|
| T |
33496340 |
agtgagcaaatatttgagtactccatggactcctccatgtgtagcttggattatgaccaatcggttcgtccaataaatcccatcta |
33496425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 42577922 - 42578106
Alignment:
| Q |
19 |
ggagttgagggtttgtgagaaggaagattacgtatccaaggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtga |
118 |
Q |
| |
|
|||||||| |||||||| ||||||| |||||||||||||||| | |||||||||||| ||||| ||||||||||| ||||||||||||||||| || | |
|
|
| T |
42577922 |
ggagttgaaggtttgtgtgaaggaatgctacgtatccaaggcatagaccatacatttatgtttgaaccatctccaatcttccatctatgacccaaggtaa |
42578021 |
T |
|
| Q |
119 |
gcaaatattgagtactccatagactcctccatgtatagcatggattatgaccaatcggtgcatccaagaaatcccgtctagggaa |
203 |
Q |
| |
|
| ||| ||||||| ||||| |||||||||||||| |||| ||||||||| |||| || |||||||||||||||| ||||||||| |
|
|
| T |
42578022 |
gtaaagattgagtgctccaaagactcctccatgtgtagcttggattatggccaagaggggcatccaagaaatcccttctagggaa |
42578106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 46 - 193
Target Start/End: Original strand, 13093630 - 13093777
Alignment:
| Q |
46 |
ttacgtatccaaggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcc |
145 |
Q |
| |
|
||||| ||||||||||| |||| ||||| ||||| | || || ||||| |||||||||| ||||||||| ||||||| |||||||||||| ||| ||| |
|
|
| T |
13093630 |
ttacggatccaaggcatattccacacattaattttcgtaccgtcaccaattttccatctataacccaaagtaagcaaatgttgagtactccaaagattcc |
13093729 |
T |
|
| Q |
146 |
tccatgtatagcatggattatgaccaatcggtgcatccaagaaatccc |
193 |
Q |
| |
|
|||| ||| ||| |||||||||||| | | |||||||||||||||| |
|
|
| T |
13093730 |
tccaagtaaagcttggattatgaccgagggaggcatccaagaaatccc |
13093777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 46 - 193
Target Start/End: Original strand, 13022106 - 13022253
Alignment:
| Q |
46 |
ttacgtatccaaggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcc |
145 |
Q |
| |
|
||||| ||||||||||| |||| ||||| ||||| | || || ||||| |||||||||| ||||||||| || |||| |||||||||||| ||| ||| |
|
|
| T |
13022106 |
ttacggatccaaggcatattccaaacattaattttcgtaccgtcaccaattttccatctataacccaaagtaagaaaatgttgagtactccaaagattcc |
13022205 |
T |
|
| Q |
146 |
tccatgtatagcatggattatgaccaatcggtgcatccaagaaatccc |
193 |
Q |
| |
|
|||| ||| ||| |||||||||||| | | |||||||||||||||| |
|
|
| T |
13022206 |
tccaagtaaagcttggattatgaccgagggaggcatccaagaaatccc |
13022253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 52 - 170
Target Start/End: Complemental strand, 23150158 - 23150040
Alignment:
| Q |
52 |
atccaaggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatg |
151 |
Q |
| |
|
||||||||||| |||| ||||| |||| || || |||||||| ||||| ||||| ||||| || || ||| ||||||||||||||||||||||||||| |
|
|
| T |
23150158 |
atccaaggcatactccacacattaatttgagaaccgtctccaattttccacctatggcccaaggtaagtaaagattgagtactccatagactcctccatg |
23150059 |
T |
|
| Q |
152 |
tatagcatggattatgacc |
170 |
Q |
| |
|
| || | |||||||||||| |
|
|
| T |
23150058 |
tgtaacttggattatgacc |
23150040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 203
Target Start/End: Original strand, 14277195 - 14277332
Alignment:
| Q |
66 |
ccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggatta |
165 |
Q |
| |
|
||||| |||||||||||| || ||||||| ||||||||||||||||| || || | ||||||||||||| |||||||||| | |||| ||||||| |
|
|
| T |
14277195 |
ccataaatttatttttgaaccgcctccaatcttccatctatgacccaatgtatacagagattgagtactccaaagactcctccggatgtagcttggatta |
14277294 |
T |
|
| Q |
166 |
tgaccaatcggtgcatccaagaaatcccgtctagggaa |
203 |
Q |
| |
|
||||||| || |||||||||| ||||| | |||||| |
|
|
| T |
14277295 |
tgaccaagagggacatccaagaagtcccgacaagggaa |
14277332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 206
Target Start/End: Complemental strand, 7273886 - 7273756
Alignment:
| Q |
76 |
atttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatgaccaatcg |
175 |
Q |
| |
|
||||| || ||||||| ||| ||||||| ||||||||| || || |||| ||| |||||||| || || |||||||| |||| ||||||||| || | | |
|
|
| T |
7273886 |
attttggaaccatctctaatcttccatccatgacccaaggtaagtaaatgttgtgtactccaaaggcttctccatgtgtagcttggattatggccgagag |
7273787 |
T |
|
| Q |
176 |
gtgcatccaagaaatcccgtctagggaaata |
206 |
Q |
| |
|
|||||||||||||||| || |||||||| |
|
|
| T |
7273786 |
aggcatccaagaaatcccttcgtgggaaata |
7273756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 52966015 - 52966197
Alignment:
| Q |
21 |
agttgagggtttgtgagaaggaagattacgtatccaaggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagc |
120 |
Q |
| |
|
|||||| ||||| || ||||||| |||||||||||||||| | |||||||||||| ||||| ||||||||||| ||||||||||||||||| || || |
|
|
| T |
52966015 |
agttgaaggtttatgtgaaggaatgctacgtatccaaggcatagaccatacatttatgtttgaaccatctccaatcttccatctatgacccaaggtaagt |
52966114 |
T |
|
| Q |
121 |
aaatattgagtactccatagactcctccatgtatagcatggattatgaccaatcggtgcatccaagaaatcccgtctagggaa |
203 |
Q |
| |
|
||| ||||||| ||||| |||||||||||||| |||| ||||||||| |||| || |||||||||||||||| ||||||||| |
|
|
| T |
52966115 |
aaagattgagtgctccaaagactcctccatgtgtagcttggattatggccaagaggggcatccaagaaatcccttctagggaa |
52966197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 66 - 203
Target Start/End: Original strand, 51141345 - 51141482
Alignment:
| Q |
66 |
ccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggatta |
165 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||| || |||| ||||||||||||||| ||| | |||||||| || | ||||||| |
|
|
| T |
51141345 |
ccatacatttatttttgaaccatctccaatcttccatctatgacccaaggtaagcagatattgagtactccaaagaattctccatgtgtaacttggatta |
51141444 |
T |
|
| Q |
166 |
tgaccaatcggtgcatccaagaaatcccgtctagggaa |
203 |
Q |
| |
|
|||||||| || ||||||||||| ||||| | |||||| |
|
|
| T |
51141445 |
tgaccaataggggcatccaagaagtcccgacgagggaa |
51141482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 2332561 - 2332410
Alignment:
| Q |
18 |
aggagttgagggtttgtgagaaggaagattacgtatccaaggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtg |
117 |
Q |
| |
|
|||||| ||||| ||| |||||| |||||||| | ||||||||| |||| ||||| ||||| |||||||| ||||| |||||||||| | ||| || |
|
|
| T |
2332561 |
aggagtggagggcttgagagaagtcagattacgaagccaaggcattttccacacattaattttagagccatcaccaattttccatctataatacaaggta |
2332462 |
T |
|
| Q |
118 |
agcaaatattgagtactccatagactcctccatgtatagcatggattatgacc |
170 |
Q |
| |
|
|| |||| || ||||||||| ||||||||||| ||||||| |||||||||||| |
|
|
| T |
2332461 |
agtaaatgtt-agtactccaaagactcctccaagtatagcttggattatgacc |
2332410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 52 - 167
Target Start/End: Original strand, 2500406 - 2500521
Alignment:
| Q |
52 |
atccaaggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatg |
151 |
Q |
| |
|
||||||||||| |||| ||||| |||| ||||| |||||||| ||||| ||||| ||||| || || ||| ||||||||||||||||||||||||||| |
|
|
| T |
2500406 |
atccaaggcatactccacacattaatttgagagccgtctccaattttccacctatggcccaaggtaagtaaagattgagtactccatagactcctccatg |
2500505 |
T |
|
| Q |
152 |
tatagcatggattatg |
167 |
Q |
| |
|
| || | ||||||||| |
|
|
| T |
2500506 |
tgtaacttggattatg |
2500521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 24596131 - 24596212
Alignment:
| Q |
110 |
ccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatgaccaatcggtgcatccaagaaatc |
191 |
Q |
| |
|
||||||| || ||| |||| | |||||| |||||||||||||| |||| |||||| ||||||| ||||||||||||||||| |
|
|
| T |
24596131 |
ccaaagtaagtaaagattgggcactccaaagactcctccatgtgtagcttggattgtgaccaaaaggtgcatccaagaaatc |
24596212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 39695226 - 39695321
Alignment:
| Q |
54 |
ccaaggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctcca |
149 |
Q |
| |
|
|||||||||| | || ||||| ||||| ||||| || ||||| |||||| ||||||||||| | || | | |||||||||||| ||||||||||| |
|
|
| T |
39695226 |
ccaaggcatgtttcacacattaattttagagccgtcaccaatcttccatatatgacccaaaataagtcattgttgagtactccaaagactcctcca |
39695321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 4755709 - 4755754
Alignment:
| Q |
121 |
aaatattgagtactccatagactcctccatgtatagcatggattat |
166 |
Q |
| |
|
|||| ||| |||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
4755709 |
aaattttgggtactccaaagactcctccatgtatagcttggattat |
4755754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 9e-38; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 22 - 206
Target Start/End: Original strand, 12459944 - 12460128
Alignment:
| Q |
22 |
gttgagggtttgtgagaaggaagattacgtatccaaggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagca |
121 |
Q |
| |
|
||||| |||||||| || || ||||| || ||||||||||| | ||| ||||||||||||||||||| ||||| |||||||||| ||||| || || | |
|
|
| T |
12459944 |
gttgaaggtttgtgcgaggggagattgcgaatccaaggcattgaccacacatttatttttgagccattaccaatcttccatctatagcccaacgtaagta |
12460043 |
T |
|
| Q |
122 |
aatattgagtactccatagactcctccatgtatagcatggattatgaccaatcggtgcatccaagaaatcccgtctagggaaata |
206 |
Q |
| |
|
| |||| |||||||| ||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||| ||||||||| |
|
|
| T |
12460044 |
atgattgggtactccaaagactcctccatgtatagcttggattatgaccaagaggtgcttccaagaaatcccgtcgagggaaata |
12460128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 52 - 206
Target Start/End: Complemental strand, 14647510 - 14647356
Alignment:
| Q |
52 |
atccaaggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatg |
151 |
Q |
| |
|
||||| ||||| | |||||||||||||||||| ||||||||||| ||||||||||||||||| || |||| | ||||||||||||| |||||||||||| |
|
|
| T |
14647510 |
atccatggcatagaccatacatttatttttgaaccatctccaattttccatctatgacccaaggtaagcagagattgagtactccaaagactcctccata |
14647411 |
T |
|
| Q |
152 |
tatagcatggattatgaccaatcggtgcatccaagaaatcccgtctagggaaata |
206 |
Q |
| |
|
| |||| |||||||||| ||| |||||||||||||| ||||| | ||||||||| |
|
|
| T |
14647410 |
tgtagcttggattatgatcaagaggtgcatccaagaagtcccgacgagggaaata |
14647356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 51492926 - 51493110
Alignment:
| Q |
19 |
ggagttgagggtttgtgagaaggaagattacgtatccaaggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtga |
118 |
Q |
| |
|
|||||||| ||||| || ||||||| ||| ||||||||||||| |||||||||||| ||||| ||| ||||||| ||||||||||||||||| || | |
|
|
| T |
51492926 |
ggagttgaaggtttatgtgaaggaatgttatgtatccaaggcatataccatacatttatgtttgaaccagctccaatcttccatctatgacccaaggtaa |
51493025 |
T |
|
| Q |
119 |
gcaaatattgagtactccatagactcctccatgtatagcatggattatgaccaatcggtgcatccaagaaatcccgtctagggaa |
203 |
Q |
| |
|
| ||| ||||||| ||||| |||| |||||||| |||| ||||||||| |||| || ||||||||||||||| ||||||||| |
|
|
| T |
51493026 |
gtaaagattgagtgctccaaagacccctccatgcgtagcttggattatggccaagaggggcatccaagaaatccattctagggaa |
51493110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 52 - 193
Target Start/End: Original strand, 13189517 - 13189658
Alignment:
| Q |
52 |
atccaaggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatg |
151 |
Q |
| |
|
|||||||||||| | || || || ||||| |||||||||||||| |||||||||| |||||| || || |||| |||||||||||| ||||| ||||| | |
|
|
| T |
13189517 |
atccaaggcatgtttcacacgttgattttagagccatctccaattttccatctataacccaaggtaagtaaatgttgagtactccaaagacttctccaag |
13189616 |
T |
|
| Q |
152 |
tatagcatggattatgaccaatcggtgcatccaagaaatccc |
193 |
Q |
| |
|
| |||| ||||||||| ||||| |||||||||||||| |||| |
|
|
| T |
13189617 |
tgtagcttggattatggccaataggtgcatccaagaagtccc |
13189658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 47 - 195
Target Start/End: Complemental strand, 20128529 - 20128381
Alignment:
| Q |
47 |
tacgtatccaaggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcct |
146 |
Q |
| |
|
|||| ||||||||||| |||| | ||| ||||||| |||||| ||||| ||||||||||| ||||| || || | | |||| ||||||||||||||||| |
|
|
| T |
20128529 |
tacgaatccaaggcatactccacatattaatttttgtgccatcaccaatcttccatctatgtcccaaggtaagaagagattgggtactccatagactcct |
20128430 |
T |
|
| Q |
147 |
ccatgtatagcatggattatgaccaatcggtgcatccaagaaatcccgt |
195 |
Q |
| |
|
||| || |||| |||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
20128429 |
ccaagtgtagcttggattatgaccaagaggtgcttccaagaaatcccgt |
20128381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 52 - 193
Target Start/End: Original strand, 27644548 - 27644689
Alignment:
| Q |
52 |
atccaaggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatg |
151 |
Q |
| |
|
||||||||||| ||||| ||||||||||| || |||| |||||| ||||| || || || || || ||||| | || |||||||| ||||||||||| | |
|
|
| T |
27644548 |
atccaaggcatagtccacacatttattttggaaccatttccaatcttccacctgtgtcctaaggtaagcaagtgctgggtactccaaagactcctccaag |
27644647 |
T |
|
| Q |
152 |
tatagcatggattatgaccaatcggtgcatccaagaaatccc |
193 |
Q |
| |
|
|||||| |||||||||||||| | |||||||||||||||| |
|
|
| T |
27644648 |
tatagcttggattatgaccaagagaggcatccaagaaatccc |
27644689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 164
Target Start/End: Complemental strand, 50181688 - 50181614
Alignment:
| Q |
90 |
tccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggatt |
164 |
Q |
| |
|
|||||| ||||||||||| || || || || ||| |||| |||||||||||||||||||||||||| | |||||| |
|
|
| T |
50181688 |
tccaatcttccatctatggcctaaggtaagtaaagattgcgtactccatagactcctccatgtataacttggatt |
50181614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 206
Target Start/End: Complemental strand, 44138618 - 44138466
Alignment:
| Q |
54 |
ccaaggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgta |
153 |
Q |
| |
|
||||||| || |||| || || ||| |||| |||| ||||| ||||||||||| ||||| || || |||| ||| | ||||||||| || ||||| || |
|
|
| T |
44138618 |
ccaaggcgtgctccacactttaattcttgaaccataaccaatcttccatctatgtcccaaggtaagtaaatgttgtgcactccataggcttctccaggtg |
44138519 |
T |
|
| Q |
154 |
tagcatggattatgaccaatcggtgcatccaagaaatcccgtctagggaaata |
206 |
Q |
| |
|
|||| ||||||||| || | || |||||||||||||||| || |||||||| |
|
|
| T |
44138518 |
tagcttggattatggccgagaggggcatccaagaaatcccttcgcgggaaata |
44138466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 27465688 - 27465617
Alignment:
| Q |
85 |
ccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatag |
156 |
Q |
| |
|
||||| ||||| |||||| |||||||||| | || ||| |||||||||||||||||||| |||| |||||| |
|
|
| T |
27465688 |
ccatcaccaattttccattcatgacccaaaataagtaaagattgagtactccatagactcttccaagtatag |
27465617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0703 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0703
Description:
Target: scaffold0703; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 22 - 206
Target Start/End: Original strand, 836 - 1020
Alignment:
| Q |
22 |
gttgagggtttgtgagaaggaagattacgtatccaaggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagca |
121 |
Q |
| |
|
||||| |||||||| || || ||||| || ||||||||||| | ||| |||||||| ||||| |||| ||||| |||||||||| ||||| || || | |
|
|
| T |
836 |
gttgaaggtttgtgcgaggggagattgcgaatccaaggcattgaccacacatttatatttgaaccattaccaatcttccatctatagcccaacgtaagta |
935 |
T |
|
| Q |
122 |
aatattgagtactccatagactcctccatgtatagcatggattatgaccaatcggtgcatccaagaaatcccgtctagggaaata |
206 |
Q |
| |
|
| |||| ||||||| ||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||| ||||||||| |
|
|
| T |
936 |
atgattggatactccaaagactcctccatgtatagcttggattatgaccaagaggtgcttccaagaaatcccgtcgagggaaata |
1020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 52 - 203
Target Start/End: Complemental strand, 46598688 - 46598537
Alignment:
| Q |
52 |
atccaaggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatg |
151 |
Q |
| |
|
||||| ||||| |||| ||||| || || || ||||||||||| ||||||||||| |||||||| || ||| ||||||||||||||| |||||||| | |
|
|
| T |
46598688 |
atccacggcatactccacacattaatcttagaaccatctccaatcttccatctatggcccaaagtaagtaaagattgagtactccataagctcctccagg |
46598589 |
T |
|
| Q |
152 |
tatagcatggattatgaccaatcggtgcatccaagaaatcccgtctagggaa |
203 |
Q |
| |
|
|||||| |||||||||||| | | |||||||||||| |||||||||||||| |
|
|
| T |
46598588 |
tatagcttggattatgaccgagggttgcatccaagaagtcccgtctagggaa |
46598537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 52 - 203
Target Start/End: Complemental strand, 31801371 - 31801220
Alignment:
| Q |
52 |
atccaaggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatg |
151 |
Q |
| |
|
||||| ||||| |||| ||||| || || || ||||||||||| ||||||||||| |||||||| || ||| ||||||||||||||| |||||||| | |
|
|
| T |
31801371 |
atccacggcatactccacacattaatcttagaaccatctccaatcttccatctatggcccaaagtaagtaaagattgagtactccataagctcctccaag |
31801272 |
T |
|
| Q |
152 |
tatagcatggattatgaccaatcggtgcatccaagaaatcccgtctagggaa |
203 |
Q |
| |
|
|||||| |||||||||||| | | ||||||||||| ||| |||||||||| |
|
|
| T |
31801271 |
tatagcttggattatgaccgagggtagcatccaagaagtccagtctagggaa |
31801220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 28 - 203
Target Start/End: Complemental strand, 512765 - 512590
Alignment:
| Q |
28 |
ggtttgtgagaaggaagattacgtatccaaggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatatt |
127 |
Q |
| |
|
|||||| |||| ||||| || || ||||| || || |||| ||||| || || || |||||| || | ||||||||||| |||||||| || ||| ||| |
|
|
| T |
512765 |
ggtttgagagagggaaggttgcggatccacggaatactccacacattaatcttagaaccatctacattcttccatctatggcccaaagtaagtaaagatt |
512666 |
T |
|
| Q |
128 |
gagtactccatagactcctccatgtatagcatggattatgaccaatcggtgcatccaagaaatcccgtctagggaa |
203 |
Q |
| |
|
|||||||||||| ||||| || ||||||| |||||||||||| | | |||||||||||| |||||||||||||| |
|
|
| T |
512665 |
gagtactccataagctccttcaggtatagcttggattatgaccgagggttgcatccaagaagtcccgtctagggaa |
512590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 52 - 170
Target Start/End: Original strand, 12351928 - 12352046
Alignment:
| Q |
52 |
atccaaggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatg |
151 |
Q |
| |
|
||||||||||| |||| ||||| |||| ||||| |||||||| ||||| ||||| ||||| || || ||| ||||||||||||||||||||||||||| |
|
|
| T |
12351928 |
atccaaggcatactccacacattaatttgagagccgtctccaattttccagctatggcccaaggtaagtaaagattgagtactccatagactcctccatg |
12352027 |
T |
|
| Q |
152 |
tatagcatggattatgacc |
170 |
Q |
| |
|
| || | |||||||||||| |
|
|
| T |
12352028 |
tgtaacttggattatgacc |
12352046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 193
Target Start/End: Complemental strand, 43968943 - 43968796
Alignment:
| Q |
46 |
ttacgtatccaaggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcc |
145 |
Q |
| |
|
||||| ||||||||||| |||| ||||| ||||||| || ||||| |||||| ||| ||||||||| ||||||| |||||||||||| ||||||| |
|
|
| T |
43968943 |
ttacggatccaaggcatattccagacattaatttttgtattgtcaccaattttccatatataacccaaagtaagcaaatgttgagtactccaaagactcc |
43968844 |
T |
|
| Q |
146 |
tccatgtatagcatggattatgaccaatcggtgcatccaagaaatccc |
193 |
Q |
| |
|
| || ||| ||| |||||||||||| | | |||||||||||||||| |
|
|
| T |
43968843 |
ttcaagtaaagcttggattatgaccgagggaggcatccaagaaatccc |
43968796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 52 - 170
Target Start/End: Complemental strand, 41146643 - 41146525
Alignment:
| Q |
52 |
atccaaggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatg |
151 |
Q |
| |
|
||||||||||| |||| ||||| ||| || || |||||||| ||||| ||||| ||||| || || ||| ||||||||||||||||||||||||||| |
|
|
| T |
41146643 |
atccaaggcatactccacacattaattagggaaccgtctccaattttccacctatggcccaaggtaagtaaagattgagtactccatagactcctccatg |
41146544 |
T |
|
| Q |
152 |
tatagcatggattatgacc |
170 |
Q |
| |
|
| || | |||||||||||| |
|
|
| T |
41146543 |
tgtaacttggattatgacc |
41146525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 70 - 206
Target Start/End: Original strand, 18222698 - 18222834
Alignment:
| Q |
70 |
acatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatgac |
169 |
Q |
| |
|
||||||||||| | || |||||||| ||||||||||| ||||| || || || ||||| ||||||| ||||||||||| ||||||| ||||||||| | |
|
|
| T |
18222698 |
acatttattttagtaccgtctccaatcttccatctatgccccaaggtaagtaatgattgaatactccaaagactcctccaagtatagcttggattatggc |
18222797 |
T |
|
| Q |
170 |
caatcggtgcatccaagaaatcccgtctagggaaata |
206 |
Q |
| |
|
| | | |||||||||||||||| || |||||||| |
|
|
| T |
18222798 |
cgagagaggcatccaagaaatcccttcgcgggaaata |
18222834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 92 - 202
Target Start/End: Complemental strand, 31402662 - 31402552
Alignment:
| Q |
92 |
caatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatgaccaatcggtgcatccaagaaatc |
191 |
Q |
| |
|
|||| |||||||||| ||||||||||| | | ||| | |||||| | |||||||||||| ||| ||||||||||||||| ||||||| ||| ||| |
|
|
| T |
31402662 |
caatcttccatctataacccaaagtgataaggttttgggaactccaaatgctcctccatgtaaagcttggattatgaccaatatttgcatccgagatatc |
31402563 |
T |
|
| Q |
192 |
ccgtctaggga |
202 |
Q |
| |
|
|| |||||||| |
|
|
| T |
31402562 |
ccttctaggga |
31402552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 5e-27; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 28 - 206
Target Start/End: Complemental strand, 16862154 - 16861976
Alignment:
| Q |
28 |
ggtttgtgagaaggaagattacgtatccaaggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatatt |
127 |
Q |
| |
|
|||||||| || || ||||| || ||||||||||| | ||| |||||||| ||||| |||| ||||| |||||||||| ||||| || || || ||| |
|
|
| T |
16862154 |
ggtttgtgcgaggggagattgcgaatccaaggcattggccacacatttatatttgaaccattaccaatcttccatctatagcccaacgtaagtaatgatt |
16862055 |
T |
|
| Q |
128 |
gagtactccatagactcctccatgtatagcatggattatgaccaatcggtgcatccaagaaatcccgtctagggaaata |
206 |
Q |
| |
|
| ||||||| |||||||||||||| |||| |||||||||||||| ||||| |||||||||||||||| ||||||||| |
|
|
| T |
16862054 |
ggttactccaaagactcctccatgtgtagcttggattatgaccaagaggtgcttccaagaaatcccgtcgagggaaata |
16861976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 66 - 203
Target Start/End: Original strand, 21731033 - 21731170
Alignment:
| Q |
66 |
ccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggatta |
165 |
Q |
| |
|
|||||||||||||||||| || |||| ||| ||||||||||| ||||| || || | | ||||||||||||| |||||||||||| | |||| ||||||| |
|
|
| T |
21731033 |
ccatacatttatttttgaaccgtctctaattttccatctatggcccaaggtaagaagagattgagtactccaaagactcctccatatgtagcttggatta |
21731132 |
T |
|
| Q |
166 |
tgaccaatcggtgcatccaagaaatcccgtctagggaa |
203 |
Q |
| |
|
||||||| |||||||||||||| ||||| | |||||| |
|
|
| T |
21731133 |
tgaccaagaggtgcatccaagaagtcccgacgagggaa |
21731170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 10160191 - 10160261
Alignment:
| Q |
97 |
ttccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatg |
167 |
Q |
| |
|
||||||||||||||||| || || ||| |||| |||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
10160191 |
ttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatg |
10160261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 51 - 203
Target Start/End: Original strand, 54422600 - 54422752
Alignment:
| Q |
51 |
tatccaaggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccat |
150 |
Q |
| |
|
|||||||||||| |||| | ||| |||||||||||||| || || ||||||||||| ||||| || |||| | |||| | ||||||||||||||| || |
|
|
| T |
54422600 |
tatccaaggcatactccacatattaatttttgagccatcaccgatcttccatctatgccccaaggtaagcagagattgggcactccatagactccttcaa |
54422699 |
T |
|
| Q |
151 |
gtatagcatggattatgaccaatcggtgcatccaagaaatcccgtctagggaa |
203 |
Q |
| |
|
|| |||| |||||| ||||||| |||| |||||||||||||| || ||||| |
|
|
| T |
54422700 |
gtgtagcttggattgtgaccaagacgtgcttccaagaaatcccgcctcgggaa |
54422752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 52 - 170
Target Start/End: Complemental strand, 32498435 - 32498317
Alignment:
| Q |
52 |
atccaaggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatg |
151 |
Q |
| |
|
||||||||||| |||| ||||| ||| || || |||||||| ||||| ||||| ||||| || || ||| ||||||||||||||||||||||||||| |
|
|
| T |
32498435 |
atccaaggcatactccacacattaattagggaaccgtctccaattttccacctatggcccaaggtaagtaaagattgagtactccatagactcctccatg |
32498336 |
T |
|
| Q |
152 |
tatagcatggattatgacc |
170 |
Q |
| |
|
| || | |||||||||||| |
|
|
| T |
32498335 |
tgtaacttggattatgacc |
32498317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 29016980 - 29016903
Alignment:
| Q |
126 |
ttgagtactccatagactcctccatgtatagcatggattatgaccaatcggtgcatccaagaaatcccgtctagggaa |
203 |
Q |
| |
|
||||| |||||||| |||||||| ||||||| |||||| |||||||| | | |||||||||||||| ||||||||| |
|
|
| T |
29016980 |
ttgagaactccatatgctcctccaagtatagcttggattgtgaccaatacgggaatccaagaaatcccttctagggaa |
29016903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 172
Target Start/End: Complemental strand, 43732766 - 43732685
Alignment:
| Q |
91 |
ccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatgaccaa |
172 |
Q |
| |
|
||||| |||||||||||||||||||| | || | ||| | |||||| ||||| ||||| || |||| |||||||||||||| |
|
|
| T |
43732766 |
ccaatcttccatctatgacccaaagtaactaagtgttgggcactccaaagacttctccaagtgtagcttggattatgaccaa |
43732685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 9181967 - 9182037
Alignment:
| Q |
97 |
ttccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatg |
167 |
Q |
| |
|
||||||||||||||||| || || ||| |||| |||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
9181967 |
ttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatg |
9182037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 11626306 - 11626236
Alignment:
| Q |
97 |
ttccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatg |
167 |
Q |
| |
|
||||||||||||||||| || || ||| |||| |||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
11626306 |
ttccatctatgacccaaggtaagtaaagattgtgtactccatagactcctccatgtataacttggattatg |
11626236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 196
Target Start/End: Original strand, 29929639 - 29929738
Alignment:
| Q |
97 |
ttccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatgaccaatcggtgcatccaagaaatcccgtc |
196 |
Q |
| |
|
|||||||||||||||||||| ||||| | || ||||||| |||||||| || || | || |||||||||||||| || | |||||||||||||||| |
|
|
| T |
29929639 |
ttccatctatgacccaaagtaagcaagtgttagatactccaaagactcctgcaagtgttgcttggattatgaccaagagggtcgtccaagaaatcccgtc |
29929738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 167
Target Start/End: Original strand, 189602 - 189684
Alignment:
| Q |
85 |
ccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatgtatagcatggattatg |
167 |
Q |
| |
|
||||| ||||| |||||||||| ||||| ||||| ||| ||||||||||| | ||||||||||||||| | | ||||||||| |
|
|
| T |
189602 |
ccatcaccaatcatccatctatgtcccaaggtgagtaaagattgagtactcaaaagactcctccatgtaaaacttggattatg |
189684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 52 - 206
Target Start/End: Original strand, 237882 - 238036
Alignment:
| Q |
52 |
atccaaggcatggtccatacatttatttttgagccatctccaatattccatctatgacccaaagtgagcaaatattgagtactccatagactcctccatg |
151 |
Q |
| |
|
||||| ||||||| ||| ||||| ||||| || || || ||||| |||||||||| ||||| || || | | |||||| |||||||| |||||||| | |
|
|
| T |
237882 |
atccatggcatggaccaaacattgattttcgaaccgtcaccaatcttccatctatagcccaaggttagaagagattgagaactccatatgctcctccaag |
237981 |
T |
|
| Q |
152 |
tatagcatggattatgaccaatcggtgcatccaagaaatcccgtctagggaaata |
206 |
Q |
| |
|
| ||| |||||| || ||||| ||||||||||||||||| | ||||||||| |
|
|
| T |
237982 |
tgaagcttggattgtggccaatattggcatccaagaaatcccgacgagggaaata |
238036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University