View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15426_high_6 (Length: 573)
Name: NF15426_high_6
Description: NF15426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15426_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 548; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 1 - 556
Target Start/End: Original strand, 5958918 - 5959473
Alignment:
| Q |
1 |
taggtggtataataacacggttaggaatggtgaaagtttgttaatgtatgaggaagatggctgtgcctttatttggaacaatgttcattaaacgtgatat |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5958918 |
taggtggtataataacacggttagaaatggtgaaagtttgttaatgtatgaggaagatggctgtgcctttatttggaacaatgttcattaaacgtgatat |
5959017 |
T |
|
| Q |
101 |
tgtatgaagttgattcttttaatattgaatatgttacaatgagtttgaagagaagtggcttatattttaacgtttttgcaccgaatgtgaaggcaagttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5959018 |
tgtatgaagttgattcttttaatattgaatatgttacaatgagtttgaagagaagtggcttatattttaacgtttttgcaccgaatgtgaaggcaagttt |
5959117 |
T |
|
| Q |
201 |
gatatataatttagtatcattctgtcaatcaaatgtcaaagctgtttttcgtaactctttgtcaaattgaggttcagaggcaattttgtgtgtaaggtaa |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5959118 |
gatatatagtttagtatcattctgtcaatcaaatgtcaaagctgtttttcgtaactctttgtcaaattgaggttcagaggcaattttgtgtgtaaggtaa |
5959217 |
T |
|
| Q |
301 |
accaacattagtattcttacagtgcgtcttgacatgaggcaaaatcatttttgatacttcacattttggaaggtagagcaattttttacaatgttgaatg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5959218 |
accaacattagtattcttacagtgcgtcttgacatgaggcaaaatcatttttgatacttcacattttggaaggtagagcaattttttacaatgttgaatg |
5959317 |
T |
|
| Q |
401 |
aattttgtttggaagataaattggaatcacttatgaagtgtaaatcacttataagtcacacatgtagagtttgggaagctataaaattttgcttctctta |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5959318 |
aattttgtttggaagataaattggaatcacttatgaagtgtaaatcacttataagtcacacatgtagagtttgggaagctataaaattttgcttctctta |
5959417 |
T |
|
| Q |
501 |
aatcaattctacccatcccaaagttgattttattgacacttttgaaatggtaatag |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5959418 |
aatcaattctacccatcccaaagttgattttattgacacttttgaaatggtaatag |
5959473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University