View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15426_low_1 (Length: 1058)

Name: NF15426_low_1
Description: NF15426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15426_low_1
NF15426_low_1
[»] chr2 (2 HSPs)
chr2 (19-1047)||(33815065-33816097)
chr2 (637-672)||(32271385-32271420)
[»] chr8 (1 HSPs)
chr8 (637-672)||(21634847-21634882)
[»] chr7 (8 HSPs)
chr7 (637-672)||(32089306-32089341)
chr7 (637-672)||(32093063-32093098)
chr7 (637-672)||(32096779-32096814)
chr7 (637-672)||(39128533-39128568)
chr7 (637-672)||(39478477-39478512)
chr7 (637-672)||(41706670-41706705)
chr7 (637-672)||(41812181-41812216)
chr7 (382-435)||(24177714-24177767)
[»] chr6 (2 HSPs)
chr6 (637-672)||(26217275-26217310)
chr6 (638-672)||(11187926-11187960)
[»] chr5 (1 HSPs)
chr5 (370-437)||(38683975-38684042)
[»] chr3 (3 HSPs)
chr3 (637-672)||(38044562-38044597)
chr3 (637-672)||(48838007-48838042)
chr3 (637-672)||(50152374-50152409)
[»] chr1 (2 HSPs)
chr1 (637-672)||(31141989-31142024)
chr1 (370-433)||(51234326-51234389)
[»] chr4 (2 HSPs)
chr4 (637-671)||(7772341-7772375)
chr4 (637-671)||(7777949-7777983)


Alignment Details
Target: chr2 (Bit Score: 880; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 880; E-Value: 0
Query Start/End: Original strand, 19 - 1047
Target Start/End: Complemental strand, 33816097 - 33815065
Alignment:
Q  19 cattgatgctagactgcactttgtttcaaactgaaatgcaatgggcacgt----gagcccagattctgggcatgccagccctataactacaaccagttat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    ||| |||||||||||||  |||||||||||||||||||||||||||    
T  33816097 cattgatgctagactgcactttgtttcaaactgaaatgcaatgggcacgtacgtgagtccagattctgggctggccagccctataactacaaccagttat 33815998  T
Q  115 ttctgcactttaataccctttattacacaattaacatagtttcaaccacaatagaatattcttaattcaaccacaatagcatagtttcatcgcaatcaaa 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33815997 ttctgcactttaataccctttattacacaattaacatagtttcaaccacaatagcatattcttaattcaaccacaatagcatagtttcatcgcaatcaaa 33815898  T
Q  215 caccataaaacacaaagctgctgccatgctttattacatcaaaacactatagattcaaaatgcaacaatgaataacatgcattcaagatcctaagcacac 314  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33815897 caccataaaacacaaagctgctgccatgcattattacatcaaaacactatagattcaaaatgcaacaatgaataacatgcattcaagatcctaagcacac 33815798  T
Q  315 cttaggataggtttaagtggggaaactataggttacctcttagaagcacaccttttccatttgaatca---cccaacttaaatttgatgatttgcatcta 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  33815797 cttaggataggtttaagtggggaaactataggttacctcttagaagcacaccttttccatttgaatcaccccccaacttaaatttgatgatttgcatcta 33815698  T
Q  412 cttccatttctccgtcgttttgtaagtgnnnnnnnnagggaaggtgttaaatgagtgttgaaaagttagagtcgttcaaataatataagagctcaaatga 511  Q
    ||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||| ||   |||||||||||||||||||    
T  33815697 cttccatttctccgtcgttttgtaagtgttttttatagggaaggtgttaaatgagtgttgaaaagttagagtcgtcca---aatataagagctcaaatga 33815601  T
Q  512 ataatttggtaagttgcggtgcatgttgtttcttagttgtcgcagaagttccacattgcttaatctttccacatatttagtgtgtgtataatgtgcacac 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33815600 ataatttggtaagttgcggtgcatgttgtttcttagttgtcgcagaagttccacattgcttaatctttccacatatttagtgtgtatataatgtgcacac 33815501  T
Q  612 tccacaaacaaatgtttctttgaggtaaaattggaacgatacaaagaagattagcatggcctcctcatcgaggatgacacgcacatattaagatacggtc 711  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33815500 tccacaaacaaatgtttctttgaggtaaaattggaacgatacgaagaagattagcatggcctcctcatcgaggatgacacgcacatattaagatacggtc 33815401  T
Q  712 cnnnnnnnnnnnnnnnnntcctgtggctttatcttcttccattgcttcttttctgcaggtaagcttctcatatcttcaccatcctggtaatcgcttctct 811  Q
    |                 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33815400 caaaaaacaaaacaaaaatcccgtggctttatcttcttccattgcttcttttctgcaggtaagcttctcatatcttcaccatcctggtaatcgcttctct 33815301  T
Q  812 tttcaaccatattttcatcatccttcaagcttccatatgcaggaaactcagtcacattgaaccagtgacattattcaaaacttgacaatgtttagggttt 911  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33815300 tttcaaccatattttcatcatccttcaagcttccatatgcaggaaactcagtcacattgaaccagtgacattattcaaaacttgacaatgtttagggttt 33815201  T
Q  912 atgcataatctgattaacattgctcaacaaattgattaaaattttgacatgtctcagaaaaatggactattgaatgtagctacttcattttagaagatga 1011  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33815200 atgcataatctgattaacattgctcaacaaattgattaaaattttgacatgtctcagaaaaatggactattgaatgtagctacttcattttagaagatga 33815101  T
Q  1012 tttgatatgtgttgtttttatttgtcttggttccct 1047  Q
    ||||||||||||||||||||||||||||||||||||    
T  33815100 tttgatatgtgttgtttttatttgtcttggttccct 33815065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 672
Target Start/End: Complemental strand, 32271420 - 32271385
Alignment:
Q  637 taaaattggaacgatacaaagaagattagcatggcc 672  Q
    |||||||||||||||||||||||||||| |||||||    
T  32271420 taaaattggaacgatacaaagaagattatcatggcc 32271385  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 672
Target Start/End: Complemental strand, 21634882 - 21634847
Alignment:
Q  637 taaaattggaacgatacaaagaagattagcatggcc 672  Q
    |||||||||||||||||| |||||||||||||||||    
T  21634882 taaaattggaacgatacagagaagattagcatggcc 21634847  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 672
Target Start/End: Complemental strand, 32089341 - 32089306
Alignment:
Q  637 taaaattggaacgatacaaagaagattagcatggcc 672  Q
    |||||||||||||||||| |||||||||||||||||    
T  32089341 taaaattggaacgatacagagaagattagcatggcc 32089306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 672
Target Start/End: Complemental strand, 32093098 - 32093063
Alignment:
Q  637 taaaattggaacgatacaaagaagattagcatggcc 672  Q
    |||||||||||||||||| |||||||||||||||||    
T  32093098 taaaattggaacgatacagagaagattagcatggcc 32093063  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 672
Target Start/End: Complemental strand, 32096814 - 32096779
Alignment:
Q  637 taaaattggaacgatacaaagaagattagcatggcc 672  Q
    |||||||||||||||||| |||||||||||||||||    
T  32096814 taaaattggaacgatacagagaagattagcatggcc 32096779  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 672
Target Start/End: Complemental strand, 39128568 - 39128533
Alignment:
Q  637 taaaattggaacgatacaaagaagattagcatggcc 672  Q
    |||||||||||||||||| |||||||||||||||||    
T  39128568 taaaattggaacgatacagagaagattagcatggcc 39128533  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 672
Target Start/End: Original strand, 39478477 - 39478512
Alignment:
Q  637 taaaattggaacgatacaaagaagattagcatggcc 672  Q
    |||||||||||||||||| |||||||||||||||||    
T  39478477 taaaattggaacgatacagagaagattagcatggcc 39478512  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 672
Target Start/End: Complemental strand, 41706705 - 41706670
Alignment:
Q  637 taaaattggaacgatacaaagaagattagcatggcc 672  Q
    |||||||||||||||||| |||||||||||||||||    
T  41706705 taaaattggaacgatacagagaagattagcatggcc 41706670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 672
Target Start/End: Original strand, 41812181 - 41812216
Alignment:
Q  637 taaaattggaacgatacaaagaagattagcatggcc 672  Q
    |||||||||||||||||| |||||||||||||||||    
T  41812181 taaaattggaacgatacagagaagattagcatggcc 41812216  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 382 - 435
Target Start/End: Original strand, 24177714 - 24177767
Alignment:
Q  382 acccaacttaaatttgatgatttgcatctacttccatttctccgtcgttttgta 435  Q
    ||||||||| ||| ||||||||| ||||| |||| ||||||||||| |||||||    
T  24177714 acccaacttgaatatgatgatttacatctgcttctatttctccgtcattttgta 24177767  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 672
Target Start/End: Complemental strand, 26217310 - 26217275
Alignment:
Q  637 taaaattggaacgatacaaagaagattagcatggcc 672  Q
    |||||||||||||||||| |||||||||||||||||    
T  26217310 taaaattggaacgatacagagaagattagcatggcc 26217275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 638 - 672
Target Start/End: Original strand, 11187926 - 11187960
Alignment:
Q  638 aaaattggaacgatacaaagaagattagcatggcc 672  Q
    ||||||||||||||||| |||||||||||||||||    
T  11187926 aaaattggaacgatacagagaagattagcatggcc 11187960  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 370 - 437
Target Start/End: Complemental strand, 38684042 - 38683975
Alignment:
Q  370 tccatttgaatcacccaacttaaatttgatgatttgcatctacttccatttctccgtcgttttgtaag 437  Q
    ||||||| || |||||||||| | ||||||| ||| ||||| |||  |||||||||||||||||||||    
T  38684042 tccatttcaagcacccaacttgattttgatggttttcatctcctttaatttctccgtcgttttgtaag 38683975  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 672
Target Start/End: Complemental strand, 38044597 - 38044562
Alignment:
Q  637 taaaattggaacgatacaaagaagattagcatggcc 672  Q
    |||||||||||||||||| |||||||||||||||||    
T  38044597 taaaattggaacgatacagagaagattagcatggcc 38044562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 672
Target Start/End: Original strand, 48838007 - 48838042
Alignment:
Q  637 taaaattggaacgatacaaagaagattagcatggcc 672  Q
    |||||||||||||||||| |||||||||||||||||    
T  48838007 taaaattggaacgatacagagaagattagcatggcc 48838042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 672
Target Start/End: Original strand, 50152374 - 50152409
Alignment:
Q  637 taaaattggaacgatacaaagaagattagcatggcc 672  Q
    |||||||||||||||||| |||||||||||||||||    
T  50152374 taaaattggaacgatacagagaagattagcatggcc 50152409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 672
Target Start/End: Complemental strand, 31142024 - 31141989
Alignment:
Q  637 taaaattggaacgatacaaagaagattagcatggcc 672  Q
    |||||||||||||||||| |||||||||||||||||    
T  31142024 taaaattggaacgatacagagaagattagcatggcc 31141989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 370 - 433
Target Start/End: Complemental strand, 51234389 - 51234326
Alignment:
Q  370 tccatttgaatcacccaacttaaatttgatgatttgcatctacttccatttctccgtcgttttg 433  Q
    ||||||| || |||||||||| ||||||||||||| ||||| |||| |||||||| || |||||    
T  51234389 tccatttcaaccacccaacttgaatttgatgatttacatctgcttcaatttctccatcattttg 51234326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 637 - 671
Target Start/End: Complemental strand, 7772375 - 7772341
Alignment:
Q  637 taaaattggaacgatacaaagaagattagcatggc 671  Q
    |||||||||||||||||| ||||||||||||||||    
T  7772375 taaaattggaacgatacagagaagattagcatggc 7772341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 637 - 671
Target Start/End: Complemental strand, 7777983 - 7777949
Alignment:
Q  637 taaaattggaacgatacaaagaagattagcatggc 671  Q
    |||||||||||||||||| ||||||||||||||||    
T  7777983 taaaattggaacgatacagagaagattagcatggc 7777949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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