View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15426_low_10 (Length: 516)
Name: NF15426_low_10
Description: NF15426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15426_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 21 - 498
Target Start/End: Original strand, 6939198 - 6939673
Alignment:
| Q |
21 |
aggtcctattgtattcaatataaatcaaaagttaacatgtgtgtgcgagtgtttgtacaataataaaatacaaaattattaattacctaaatattggatt |
120 |
Q |
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| T |
6939198 |
aggtcctattgtattcaatataaatcaaaagttaacatgtgtgtg--agtgtttgtacaataataaaatacaaaattattaattacctaaaaattggatt |
6939295 |
T |
|
| Q |
121 |
tccttgaggccacatgaggttaatgaaatcttgatgagtcgtatcatgatcaagatcactatcaatcccaaagctttgagaattgggaatggcatagctt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6939296 |
tccttgaggccacatgaggttaatgaaatcttgatgagtcgtatcatgatcaagatcactatcaatcccaaagctttgagaattgggaatggcatagctt |
6939395 |
T |
|
| Q |
221 |
ttgttgatgtaacccctgtaaagctttggactaacaaacttctccttggtgtcctcaggcagatcaaacaaagatttcattcctgtgaacaattctccac |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6939396 |
ttgttgatgtaacccctgtaaagctttggactaacaaatttctccttggtgtcttcaggcagatcaaacaaagatttcattcctgtgaacaattgtccac |
6939495 |
T |
|
| Q |
321 |
ataattcctttgagatttcatcacattttaagaggaagcaacctcgactctcaaatgcttctctcactttcttgctcatttctttccacccttcactccc |
420 |
Q |
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| T |
6939496 |
ataattcctttgagatttcatcacattttaagaggaagcaacctcgactctcaaatgcttctctcactttcttgctcatttctttccacccttcactccc |
6939595 |
T |
|
| Q |
421 |
ttcttctaatgtcactccactactcctacggaaatccaaaattgggatctcactttcactctccatttttctcccttc |
498 |
Q |
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| T |
6939596 |
tttttctaatgtcactccactactcctacggaaatccaaaattgggatctcactttcattctccatttttctcccttc |
6939673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 257 - 424
Target Start/End: Original strand, 6932029 - 6932196
Alignment:
| Q |
257 |
aacttctccttggtgtcctcaggcagatcaaacaaagatttcattcctgtgaacaattctccacataattcctttgagatttcatcacattttaagagga |
356 |
Q |
| |
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||||||| ||| || ||||| || ||||||||||| |||||||| ||||||||||||||| ||| | ||| || |||||||||||| ||| || || |
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| T |
6932029 |
aacttctgcttagtctcctcgggtagatcaaacaatgatttcatgcctgtgaacaattcttcacgtgattgattcaagatttcatcaccccttacgatga |
6932128 |
T |
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| Q |
357 |
agcaacctcgactctcaaatgcttctctcactttcttgctcatttctttccacccttcactcccttct |
424 |
Q |
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| T |
6932129 |
aacaaccatgattctcaaatgcttctctcactttcttgcacatttctttccatccttcactctcttct |
6932196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 81 - 143
Target Start/End: Original strand, 6931853 - 6931915
Alignment:
| Q |
81 |
taataaaatacaaaattattaattacctaaatattggatttccttgaggccacatgaggttaa |
143 |
Q |
| |
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| T |
6931853 |
taataaaataaaaaacaattaattacctaaaagttggatttccttgaggccacaagaggttaa |
6931915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 257 - 472
Target Start/End: Complemental strand, 49831903 - 49831688
Alignment:
| Q |
257 |
aacttctccttggtgtcctcaggcagatcaaacaaagatttcattcctgtgaacaattctccacataattcctttgagatttcatcacattttaagagga |
356 |
Q |
| |
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||||||| |||||| |||||||| ||||||||||| |||||||| || ||||||| || | ||| |||||| |||| ||||||||||| ||||||| || |
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| T |
49831903 |
aacttctgcttggtctcctcaggtagatcaaacaatgatttcataccagtgaacattttttcacgtaattcatttggtatttcatcacactttaagaaga |
49831804 |
T |
|
| Q |
357 |
agcaacctcgactctcaaatgcttctctcactttcttgctcatttctttccacccttcactcccttcttctaatgtcactccactactcctacggaaatc |
456 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||| |
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| T |
49831803 |
agcaaccatgactctcaaatgcttctctcactttcttgctcatttctttccacccttcactgccttcttctaatgtcactccactacttttacgaaaatc |
49831704 |
T |
|
| Q |
457 |
caaaattgggatctca |
472 |
Q |
| |
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|||||||||||||||| |
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| T |
49831703 |
caaaattgggatctca |
49831688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 355 - 425
Target Start/End: Original strand, 2096357 - 2096427
Alignment:
| Q |
355 |
gaagcaacctcgactctcaaatgcttctctcactttcttgctcatttctttccacccttcactcccttctt |
425 |
Q |
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||||||||| |||||||| |||||||||||||||| |||||||||| ||||||| | ||||||||||||| |
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| T |
2096357 |
gaagcaaccatgactctcacatgcttctctcacttttttgctcatttttttccactcctcactcccttctt |
2096427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 348 - 423
Target Start/End: Complemental strand, 12458958 - 12458883
Alignment:
| Q |
348 |
ttaagaggaagcaacctcgactctcaaatgcttctctcactttcttgctcatttctttccacccttcactcccttc |
423 |
Q |
| |
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|||||| ||||||||| |||||||| |||||||||||||||| |||||||| | ||||||| | ||||||||||| |
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| T |
12458958 |
ttaagaagaagcaaccatgactctcacatgcttctctcacttttttgctcatctttttccactcctcactcccttc |
12458883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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